PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g005820.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 748aa MW: 83882.1 Da PI: 6.372 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.6e-23 | 31 | 132 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++ +++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Sopen03g005820.2 31 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 120 99*****************************7555555.59************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Sopen03g005820.2 121 EKNQLFLGIRRA 132 89999****997 PP | |||||||
2 | Auxin_resp | 115.1 | 6.4e-38 | 157 | 240 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k Sopen03g005820.2 157 AAHAASTNSCFIVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 240 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.76E-49 | 15 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.4E-41 | 24 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.16E-21 | 30 | 126 | No hit | No description |
Pfam | PF02362 | 2.0E-21 | 31 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-23 | 31 | 133 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.984 | 31 | 133 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.9E-33 | 157 | 240 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.055 | 621 | 705 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 7.85E-7 | 624 | 695 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MTLQPLTPQE QKDTYLPVEL GIPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL 60 DFSQTPPCQE LIARDLHDIE WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN 120 EKNQLFLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA ASTNSCFIVF FNPRASPSEF 180 VIPLSKYIKA VYHTRVSVGM RFRMLFETEE SSVRRYMGTI TGIGDLDPVR WANSHWRSVK 240 VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGTSSFQE NNSEAINGMT 300 WLRGESSEQG PHLLNLQSFG GMFPWMQQRV DPTMLRNDLN QQYQAMLASG LQNFGSGDLM 360 KQQLMQFPQP VQYVQHAGSV NPLLQQQQQQ QETMQQTIHQ HMLPAQTQDN LQRQQQQHVS 420 NQTEEQSHQH SYQDAYQIPN SQLQQKQPSN VPSPSFSKPD IADPSSKFSA SIAPSGMPTV 480 LGSLCSEGTT NFLNFNIIGQ QPVIMEQQQQ QKSWMAKFAN SQLNTGPSSP SLSGYGKETS 540 NSQETCSLDA QNQSLFGANV DSSGLLLPTT VSNVATTSID ADISSMPLGT SGFPNSLYSY 600 VQDSTDLLHN VGQADAQTVP RTFVKVYKSA SLGRSLDITR FNSYHELRQE LGQMFGIEGF 660 LENPQRSGWQ LVFVDRENDV LLLGDDPWEE FVNNVWYIKI LSPEDVQKLG KEEVGSLNRG 720 PPERMSSNNS ADGRDFMSGL PSIGSLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-112 | 1 | 261 | 128 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM560979 | 0.0 | HM560979.1 Solanum lycopersicum auxin response factor 8-1 (ARF8-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069914.1 | 0.0 | auxin response factor 8-like isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | E0A8P3 | 0.0 | E0A8P3_SOLLC; Auxin response factor | ||||
STRING | Solyc03g031970.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |