PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g005820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 844aa MW: 94404 Da PI: 6.1839 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++ +++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Sopen03g005820.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 216 99*****************************7555555.59************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Sopen03g005820.1 217 EKNQLFLGIRRA 228 89999****997 PP | |||||||
2 | Auxin_resp | 114.8 | 7.5e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k Sopen03g005820.1 253 AAHAASTNSCFIVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-49 | 111 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-21 | 126 | 222 | No hit | No description |
PROSITE profile | PS50863 | 11.984 | 127 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.8E-33 | 253 | 336 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 23.055 | 717 | 801 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.16E-7 | 720 | 791 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence Send to blast |
MKLSTSGMGQ QAHEGENKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDIHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LFLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAASTN SCFIVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG TSSFQENNSE AINGMTWLRG ESSEQGPHLL NLQSFGGMFP 420 WMQQRVDPTM LRNDLNQQYQ AMLASGLQNF GSGDLMKQQL MQFPQPVQYV QHAGSVNPLL 480 QQQQQQQETM QQTIHQHMLP AQTQDNLQRQ QQQHVSNQTE EQSHQHSYQD AYQIPNSQLQ 540 QKQPSNVPSP SFSKPDIADP SSKFSASIAP SGMPTVLGSL CSEGTTNFLN FNIIGQQPVI 600 MEQQQQQKSW MAKFANSQLN TGPSSPSLSG YGKETSNSQE TCSLDAQNQS LFGANVDSSG 660 LLLPTTVSNV ATTSIDADIS SMPLGTSGFP NSLYSYVQDS TDLLHNVGQA DAQTVPRTFV 720 KVYKSASLGR SLDITRFNSY HELRQELGQM FGIEGFLENP QRSGWQLVFV DRENDVLLLG 780 DDPWEEFVNN VWYIKILSPE DVQKLGKEEV GSLNRGPPER MSSNNSADGR DFMSGLPSIG 840 SLDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 20 | 357 | 51 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM560979 | 0.0 | HM560979.1 Solanum lycopersicum auxin response factor 8-1 (ARF8-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069914.1 | 0.0 | auxin response factor 8-like isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | E0A8P3 | 0.0 | E0A8P3_SOLLC; Auxin response factor | ||||
STRING | Solyc03g031970.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |