PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g004900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 807aa    MW: 88004.9 Da    PI: 6.427
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g004900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-20115169256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  Sopen03g004900.1 115 KKYHRHTPYQIQELEACFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 169
                       78899***********************************************999 PP
2START151.47.7e-483225441205
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela + ++el+k+a+ ++p+W        e +n +e+ ++f++  +      + ea +a+g v  ++ +lve+l+d++ +W   +     k +
  Sopen03g004900.1 322 ELAFASMNELIKLADIGAPLWLGNFdgtaEVLNLEEYARSFPPCIGikpahLTAEATKATGTVMINSLTLVETLMDTS-RWMDIFScivgKTS 413
                       578999****************999899999************999********************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t++vis+       g  ql++ae+q++s lvp R + f+R+++q+ +g+wv vdvS+d  q+ p  +    +++lpSg+++++++ng skv+w
  Sopen03g004900.1 414 TINVISNSsggskdGNMQLIQAEFQVPSALVPvRRVKFLRFCKQHAEGVWVMVDVSIDAIQEGP-LPLDGSCRRLPSGCIVQELPNGCSKVIW 505
                       ******99999*****************************************************.577777779******************* PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                       +eh++++++++h+++++ ++sgl +ga++w atlqrqce
  Sopen03g004900.1 506 IEHMEYDESVVHNYYHPYIRSGLGFGAQRWIATLQRQCE 544
                       **************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-19101171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-22109179IPR009057Homeodomain-like
PROSITE profilePS5007116.925111171IPR001356Homeobox domain
SMARTSM003891.8E-16113175IPR001356Homeobox domain
PfamPF000464.0E-18115169IPR001356Homeobox domain
CDDcd000866.87E-17115172No hitNo description
PROSITE profilePS5084835.458313548IPR002913START domain
SuperFamilySSF559614.81E-26315544No hitNo description
CDDcd088751.28E-103317544No hitNo description
SMARTSM002344.4E-31322545IPR002913START domain
PfamPF018521.2E-40323544IPR002913START domain
SuperFamilySSF559615.49E-10617774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MSFGGFIGSS SGGNGGGVSR LVGDTSYEAM PTATMAQSQL ITSSLSHSMF NSSPLSLALK  60
PKMEGSGDLS FDGMGRNSRD DEYESRSGTG SDNFDGIGSG DEIETHIGSS SKSAKKYHRH  120
TPYQIQELEA CFKENPHPDE KARLELGKRL TLESRQVKFW FQNRRTQMKT QMERHENSML  180
KQENDKLRIE NIAMKEAMRS PACPHCGGQA IFGEIHIEEH HLKIENARLR DEYSRICVVA  240
NKFLGRQVES VHGPMSAGMA NSGLELAVGR NGYGAMSSVD TALPMGLNFG NNFSSALPAI  300
SPRPALSMAG VDVSFDRNML MELAFASMNE LIKLADIGAP LWLGNFDGTA EVLNLEEYAR  360
SFPPCIGIKP AHLTAEATKA TGTVMINSLT LVETLMDTSR WMDIFSCIVG KTSTINVISN  420
SSGGSKDGNM QLIQAEFQVP SALVPVRRVK FLRFCKQHAE GVWVMVDVSI DAIQEGPLPL  480
DGSCRRLPSG CIVQELPNGC SKVIWIEHME YDESVVHNYY HPYIRSGLGF GAQRWIATLQ  540
RQCEFLTIMS SPVPSGDNSV LTSSGRRSIA MLARRVIRHF CIGVCATYYN WESIQLGTAE  600
ESKFIMRKGV GEPGDLNGMV LSASRTLWLP ITHQRLFDFL RNEQMRGQWD VLSQGGSVHR  660
IVHIAKGQDP GNSITLFRTT VANSDGSQNS LLTLQESCTD VSGSIIAYSS LNTGDMNAVM  720
NGGDSSCVTF LPSGFAIVPD CYENSNGVAG IGTLENGGKI NGCLLTMGYQ VLMSNPPTGN  780
LTMDSVNTVD SLITRTVQNI KLAFQCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070591.10.0homeobox-leucine zipper protein ROC5 isoform X1
TrEMBLA0A3Q7FF190.0A0A3Q7FF19_SOLLC; Uncharacterized protein
STRINGSolyc03g026070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein