PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g004680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 281aa    MW: 31821.4 Da    PI: 6.7398
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g004680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
  Sopen03g004680.1 16 KGLWSPDEDDRLKNYIIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 63
                      678*******************************************97 PP
2Myb_DNA-binding53.36.3e-1769114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ eE+++++ +++++G++ W+ Ia+ ++ gRt++++k++w++yl
  Sopen03g004680.1  69 RGAFSLEEEDIILTLHAMFGNK-WSQIAQQLP-GRTDNEIKNHWHSYL 114
                       89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2331163IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-211166IPR009057Homeodomain-like
SuperFamilySSF466896.24E-2914110IPR009057Homeodomain-like
SMARTSM007172.5E-111565IPR001005SANT/Myb domain
PfamPF002491.3E-131663IPR001005SANT/Myb domain
CDDcd001678.26E-101963No hitNo description
PROSITE profilePS5129426.90564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2567118IPR009057Homeodomain-like
SMARTSM007176.8E-1668116IPR001005SANT/Myb domain
PfamPF002491.0E-1569114IPR001005SANT/Myb domain
CDDcd001672.73E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGCKLAAEKP KQKHKKGLWS PDEDDRLKNY IIKHGHGCWS SVPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG AFSLEEEDII LTLHAMFGNK WSQIAQQLPG RTDNEIKNHW HSYLKKRVSK  120
MGENEGHTKS GKTDSSSPSL KKLTPQNSSL DSFEHMEGSL ADSDQSVYPR ETQKSNLPKV  180
LFAEWLSLDQ FNGQDFQNSG SFEPCKSNFG YNNNAELHGI FMHSLPMNND DGSSSYGNGV  240
NQEVHNDIFP PQLKFEDTLS GNGFEDFMSG EFNINDDVMY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068240.10.0transcription factor LAF1-like
TrEMBLM1B4S40.0M1B4S4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000370800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.19e-62myb domain protein 19