PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g004020.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 629aa    MW: 68958.8 Da    PI: 6.7088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g004020.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.56.7e-1082626293374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       + ++e+A+a+ +g++  a ++L+rls+ a+ +g++ qRl+ay++ AL++rl+     +    p+ e    +s e++  ++ ++evsP++k+++
  Sopen03g004020.1 262 QSIIEAATAIYDGKNDVALEILTRLSQVANIRGSSDQRLTAYMVAALRSRLNP----VDYPPPVLEL---QSREHTDTTHNLYEVSPCFKLGF 347
                       6789************************************************9....3333344444...47778888888************ PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       ++aN aIleav+ +  +++H+iDfdi+qG+Q++ Ll+aLa +R+++p+ l+iT++ +++ g  e+l++++  L+++A++lgv + fnv ++ +
  Sopen03g004020.1 348 MAANLAILEAVADHpfNKLHVIDFDIGQGGQYLHLLHALAaKRSNNPAVLKITAFTEQAGGVDERLNSINMELNSVANRLGVCLYFNV-MSCK 439
                       *************999***********************967779999*********8888**************************9.7889 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       ++dl+ e+L ++p++alaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveq+++ n+++Fl+r+ ea+ +y a+fdsl+a++pr+
  Sopen03g004020.1 440 VADLSRENLGLDPDDALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQDMNGNTAPFLARVNEACGHYGAIFDSLDATVPRD 532
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvs 369
                       s +r+ +E+  l+r+ +n vaceg++r+er+e ++kWr+r+++aGF+p p+s+ +a++ ++ l+     + g++v+e+sg +++gW++r+L++
  Sopen03g004020.1 533 SMDRVRIEEG-LSRKMSNSVACEGRDRVERCEVFGKWRARMSMAGFGPKPVSQIVANSLRSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTV 624
                       **********.************************************************9999876556899********************* PP

              GRAS 370 vSaWr 374
                       +SaWr
  Sopen03g004020.1 625 ASAWR 629
                       ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.539234607IPR005202Transcription factor GRAS
PfamPF035142.3E-105262629IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSSGFSGEIY GAGGRSTMNN NNSQRPYSSP LSGILPDPVT QMVHQGRPNL MGKRSLAEFQ  60
QQQQLQFLQL QQQKQQQMML LQQQQQQGIG FYLRNVKPRS YQQSSPMSPL SPVDFSVAAA  120
ASISSSNSNV STMMNTRQAL PVLQQPANMG GFLSPGIQNY STGVSSLNPV QNRATIGVQE  180
SDKKMMNCLQ ELEKQLLDDN DEEEGDTVSV ITNNEWSETI QNLISPSQNQ NQIQKLASLS  240
PSSSTSSCAS STESPAISCP KQSIIEAATA IYDGKNDVAL EILTRLSQVA NIRGSSDQRL  300
TAYMVAALRS RLNPVDYPPP VLELQSREHT DTTHNLYEVS PCFKLGFMAA NLAILEAVAD  360
HPFNKLHVID FDIGQGGQYL HLLHALAAKR SNNPAVLKIT AFTEQAGGVD ERLNSINMEL  420
NSVANRLGVC LYFNVMSCKV ADLSRENLGL DPDDALAVNF AFKLYRLPDE SVTTENLRDE  480
LLRRVKALSP KVVTVVEQDM NGNTAPFLAR VNEACGHYGA IFDSLDATVP RDSMDRVRIE  540
EGLSRKMSNS VACEGRDRVE RCEVFGKWRA RMSMAGFGPK PVSQIVANSL RSKLNSGTRG  600
NPGFTVNEQS GGICFGWMGR TLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4028762924375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070693.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-166SCL8_ARATH; Scarecrow-like protein 8
TrEMBLQ00LP00.0Q00LP0_SOLLC; GRAS10
STRINGSolyc03g025170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-162SCARECROW-like 8