PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g003580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 441aa    MW: 49938 Da    PI: 7.4964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g003580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.7e-26280337259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dD+++W+KYGqK++kgs+fpr+Y++C+ ++C+++k +e+s +++k++ + Y++ Hnh+
  Sopen03g003580.1 280 DDKWAWQKYGQKSIKGSPFPRNYFKCSASNCKATKIIEKSPKNEKYFLVSYSDVHNHD 337
                       8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-24269339IPR003657WRKY domain
SuperFamilySSF1182902.48E-22274339IPR003657WRKY domain
PROSITE profilePS5081125.58274339IPR003657WRKY domain
SMARTSM007744.7E-26279338IPR003657WRKY domain
PfamPF031063.4E-19280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEEQMEEQKK TVRQDVIADV ISQIKHARLI DPNILAALSI SSPRESTSVQ AESANSELKN  60
QLNQITEEAE KLNGMSNGLQ VEIQEKLKNS EKRLGLSLEK SNKLEKDIVK LKEDLEKSLK  120
WTKSSKLLSN ATTQSNFNKK GLGSLNITPP YNPHMSERSS SQCWYMNSGC TKHMTGDIKN  180
FLSLKTLQGG GVSFGDGNLK SNESNDEDDV FKLFNSQKIE GSEADAEQQL KNDFDDQNHS  240
LPEEADEVEK CNENSMIKTF KRRDQSPRVF NEVLQEELTD DKWAWQKYGQ KSIKGSPFPR  300
NYFKCSASNC KATKIIEKSP KNEKYFLVSY SDVHNHDPPP SRRSLALYNN ISKRRLPKSI  360
NIVPKALKLN ASSSSSSSSS SKRAKRFKVD ASPTAPKPEI KKTNEMVDDV VVENKGDIIE  420
EEEITYDKIF MDFENSNKLY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-162773401275WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-23WRKY family protein