PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g003580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 441aa MW: 49938 Da PI: 7.4964 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.1 | 5.7e-26 | 280 | 337 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dD+++W+KYGqK++kgs+fpr+Y++C+ ++C+++k +e+s +++k++ + Y++ Hnh+ Sopen03g003580.1 280 DDKWAWQKYGQKSIKGSPFPRNYFKCSASNCKATKIIEKSPKNEKYFLVSYSDVHNHD 337 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-24 | 269 | 339 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-22 | 274 | 339 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.58 | 274 | 339 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-26 | 279 | 338 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.4E-19 | 280 | 337 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEEQMEEQKK TVRQDVIADV ISQIKHARLI DPNILAALSI SSPRESTSVQ AESANSELKN 60 QLNQITEEAE KLNGMSNGLQ VEIQEKLKNS EKRLGLSLEK SNKLEKDIVK LKEDLEKSLK 120 WTKSSKLLSN ATTQSNFNKK GLGSLNITPP YNPHMSERSS SQCWYMNSGC TKHMTGDIKN 180 FLSLKTLQGG GVSFGDGNLK SNESNDEDDV FKLFNSQKIE GSEADAEQQL KNDFDDQNHS 240 LPEEADEVEK CNENSMIKTF KRRDQSPRVF NEVLQEELTD DKWAWQKYGQ KSIKGSPFPR 300 NYFKCSASNC KATKIIEKSP KNEKYFLVSY SDVHNHDPPP SRRSLALYNN ISKRRLPKSI 360 NIVPKALKLN ASSSSSSSSS SKRAKRFKVD ASPTAPKPEI KKTNEMVDDV VVENKGDIIE 420 EEEITYDKIF MDFENSNKLY I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-16 | 277 | 340 | 12 | 75 | WRKY transcription factor 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 2e-23 | WRKY family protein |