PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g003410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 399aa    MW: 44054.7 Da    PI: 4.2739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g003410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19128177255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Sopen03g003410.1 128 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 177
                       89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-30127185IPR001471AP2/ERF domain
SMARTSM003801.7E-38128191IPR001471AP2/ERF domain
CDDcd000185.01E-33128184No hitNo description
SuperFamilySSF541711.18E-21128185IPR016177DNA-binding domain
PfamPF008471.1E-12128177IPR001471AP2/ERF domain
PROSITE profilePS5103223.947128185IPR001471AP2/ERF domain
PRINTSPR003674.8E-10129140IPR001471AP2/ERF domain
PRINTSPR003674.8E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDYHSLCPIK YTEHRNVIRK VTKPSLVKSK KFSEATKSSQ FNPSVPRTVR ISVTDPDATD  60
SSSDEEDLLF GRRRVKKYIN EISIETAVKC EVSSGNGKTV NKRAPEPLQT KQKPMKVQPP  120
QSAGAARKFR GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGPDA  180
LTNFSTPAKA EPEPEPEPEP EISVLSHSGY ESGNESRNIP SPTSVLRCTM SQSESGSGQV  240
HVSEECPSVQ GSMECEQTVQ EIEPFVQCAA EPLIPSAIQQ DVEECQGETS MIPDYSSDYL  300
PTDIPFLNDF FNFDGSAAEQ TLLEDSTMTS VTSTTTTTTP NEFGDLCNDS LDFGNDFLFN  360
DADFAEFGNF DDLGDLGMDD FSQDNSVVDY SSVDSLLAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21127184159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068477.10.0ethylene-responsive transcription factor CRF4
TrEMBLM1DCS90.0M1DCS9_SOLTU; Uncharacterized protein
STRINGSolyc03g007460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-61cytokinin response factor 4