PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g003340.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 39878.5 Da PI: 6.2239 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.4e-29 | 140 | 201 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ g+++pr+YYrCt + gC + k+v+rs+edp+++e+tY+g+H+++ Sopen03g003340.2 140 LDDGYSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLAMKQVQRSDEDPNIFEVTYRGRHTCN 201 59**************************988889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.502 | 135 | 198 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.9E-28 | 138 | 201 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-26 | 139 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-40 | 140 | 202 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 141 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MDNYGADNNS HEINRLVGHE LTQGRDLVQQ LQLHLNAPNY NSSSSSENTR EFLLHNIQSK 60 FDRALSLLQC NTINGDNSNS LLPPSNSPAI PIIGMSDSPR SSEDSDRDLE PKEHHATRKS 120 TPRWIKQVHI QPGAPIEGTL DDGYSWRKYG QKDILGAKHP RGYYRCTLRH VQGCLAMKQV 180 QRSDEDPNIF EVTYRGRHTC NQGGGASVSN VNPAPPPLPL PLVIHQIQEP NIGNHEQYQQ 240 LNQNSNEILL NFQKSLSISK DDFNFKNTHH DQPNNVPYIP SFNNYPSSSS NDHQDYNFLN 300 NSSTIPNNNF VESFPPSFNN MSTGTSQQNE ADYQFNSMGF ESNFPYDYQR FS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 140 | 200 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069407.2 | 0.0 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A3Q7FDQ3 | 0.0 | A0A3Q7FDQ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g007380.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 9e-39 | WRKY DNA-binding protein 30 |