PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g002900.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 976aa MW: 109542 Da PI: 7.3868

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g002900.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.4	8.5e-09	210	264	21	75
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 ++rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ Sopen03g002900.1 210 SGRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ 264 56888999999**************************************975444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.510.10	3.0E-6	804	923	No hit	No description
CDD	cd00180	8.81E-18	825	961	No hit	No description
SuperFamily	SSF56112	4.01E-16	825	960	IPR011009	Protein kinase-like domain

Sequence ? help Back to Top
Protein Sequence Length: 976 aa Download sequence Send to blast
MDENKGDTTK KQHLCNSPVD PHEQDSPDNT TPLQHPVVSA APFISSSAIY NIPTAAVSFE 60 QQHQFEVVNT KRPRYTSSQW KFISSHHQQQ QQKAGTILSA ESSPISPSAH ATTATNIPQT 120 QVPTASSSDT ASSPSHSPRP SSEPSKSEGG EQVHQQFRKG KYVSPVWKPN EMLWLARAWK 180 IQYQGSGSGS GSSSELVHLE GSPGAAGGGS GRGKTRADKD REVAEFLNRH GVNRDAKTAG 240 TKWDNMLGEF RKVYEWERGA EREQIGKSYF RLSPYERKIH RLPASFDEQV FEELSQFMGS 300 RMRTPQTRSG TQSNSIADDI PTPLIVTKSL PPPPPPFRED ELPHSARAKQ LVMSSGTETL 360 IHGTRGGFLG FETVQPSSSL DIMGGGPSSS GSKELRRIGK IRMIWEESVS LWAEEGEHHR 420 GRVKLQGCSF LNADEIAFLD DSMVASTMEA FEDGPMKGFS VDRFQSGIQL KVFGRRKSSS 480 PIGPSERLQL PSSEFPIRST TPWEFQDPTE YYVGCLRSPP PTLPSLFELS WHLQQPPPEE 540 LRFPLRRDVF KDLPQGRELF FTTSSTELLD CRGITYDVLT CIMRSNPSLN AATATDRDSF 600 IGLWDDCINR MISKFCSIEM VFVRKSSSSL AETVQDQWPN VTAFLRNFCL WRGEETDQLR 660 EGQLDPSSSI VEKFLWSYMD LPYVLGYYAV GFIVTFCALS RSQERIIRTD LYTVDLSTPV 720 ERLKALVPCW RIAGLLPLLA DKCFHYMSSN FKHLPYTDFE RTDFGNGNFT EMTPNTVVRY 780 FSSKRKWLGM KEIYDFLDHR IPHAEFVVRA SEKDLALVFK PRGCKFKPVN CDQLIEALKQ 840 VTKALVALHD LSFMHRDLGW DKVMRRIDRE NEWFITGFDE AVTAPQLYPH GGAAAGTGMG 900 RHPPEMGRNY HGVKVDVWGI GQLVKSCGLV GVPKLLRELQ NRCLDHNPEQ RPTAADCYRH 960 LLQLQSSISA AAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 976 aa Download sequence Send to blast

MDENKGDTTK KQHLCNSPVD PHEQDSPDNT TPLQHPVVSA APFISSSAIY NIPTAAVSFE  60
QQHQFEVVNT KRPRYTSSQW KFISSHHQQQ QQKAGTILSA ESSPISPSAH ATTATNIPQT  120
QVPTASSSDT ASSPSHSPRP SSEPSKSEGG EQVHQQFRKG KYVSPVWKPN EMLWLARAWK  180
IQYQGSGSGS GSSSELVHLE GSPGAAGGGS GRGKTRADKD REVAEFLNRH GVNRDAKTAG  240
TKWDNMLGEF RKVYEWERGA EREQIGKSYF RLSPYERKIH RLPASFDEQV FEELSQFMGS  300
RMRTPQTRSG TQSNSIADDI PTPLIVTKSL PPPPPPFRED ELPHSARAKQ LVMSSGTETL  360
IHGTRGGFLG FETVQPSSSL DIMGGGPSSS GSKELRRIGK IRMIWEESVS LWAEEGEHHR  420
GRVKLQGCSF LNADEIAFLD DSMVASTMEA FEDGPMKGFS VDRFQSGIQL KVFGRRKSSS  480
PIGPSERLQL PSSEFPIRST TPWEFQDPTE YYVGCLRSPP PTLPSLFELS WHLQQPPPEE  540
LRFPLRRDVF KDLPQGRELF FTTSSTELLD CRGITYDVLT CIMRSNPSLN AATATDRDSF  600
IGLWDDCINR MISKFCSIEM VFVRKSSSSL AETVQDQWPN VTAFLRNFCL WRGEETDQLR  660
EGQLDPSSSI VEKFLWSYMD LPYVLGYYAV GFIVTFCALS RSQERIIRTD LYTVDLSTPV  720
ERLKALVPCW RIAGLLPLLA DKCFHYMSSN FKHLPYTDFE RTDFGNGNFT EMTPNTVVRY  780
FSSKRKWLGM KEIYDFLDHR IPHAEFVVRA SEKDLALVFK PRGCKFKPVN CDQLIEALKQ  840
VTKALVALHD LSFMHRDLGW DKVMRRIDRE NEWFITGFDE AVTAPQLYPH GGAAAGTGMG  900
RHPPEMGRNY HGVKVDVWGI GQLVKSCGLV GVPKLLRELQ NRCLDHNPEQ RPTAADCYRH  960
LLQLQSSISA AAAGGY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068522.1	0.0	uncharacterized protein LOC107013051
TrEMBL	A0A3Q7FFT2	0.0	A0A3Q7FFT2_SOLLC; Uncharacterized protein
STRING	Solyc03g006900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12936	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-08	Trihelix family protein