PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g002330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22409.4 Da PI: 9.6159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+ +++g Sopen03g002330.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKCRVWLGTFDTAEEAARAYDKAAIEFRG 72 6********.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.7E-39 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-33 | 23 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 23 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-14 | 23 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-22 | 23 | 81 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-11 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAPKPKCTTA ATAATAAVVK EVHYRGVRKR PWGRYAAEIR DPGKKCRVWL GTFDTAEEAA 60 RAYDKAAIEF RGAKAKTNFQ MQQQPDDVIR SPSDTSTVES SSAAVAVVVA KAPAMVESIP 120 LDLSLGSSSS AVGIFSKGVG KFLFQNSPPM YYFQGAGVIR NGGGGGSGDG GGAGGAGGMM 180 KSESDSSTVI DFMGNNFKPK AKFDLNLLPT PEDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 23 | 82 | 5 | 65 | ATERF1 |
3gcc_A | 3e-22 | 23 | 82 | 5 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069190.1 | 1e-156 | ethylene-responsive transcription factor 4-like | ||||
Swissprot | O80340 | 2e-37 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3Q7FFD2 | 1e-106 | A0A3Q7FFD2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g006320.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-25 | erf domain protein 9 |