PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g038370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28715.2 Da PI: 6.2527 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +lv+ + G +W+t+++ g+ R++k+c++rw +yl Sopen02g038370.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTVPKLAGLQRCGKSCRLRWINYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++ Sopen02g038370.1 67 RGALSEAEEDQIIELHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110 78889*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.558 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.22E-5 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.107 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAL SEAEEDQIIE LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLQVMG 120 IDPLTHQPID KEHETDELLS ITETYYDKRN ETENNIENAN DISLPNNRLS ENINGELWNK 180 SFKTISTCYS PSISLESINF STTSTATESS SNVAAAPAEE DSVQQWMDSI FSCAINQLEE 240 DLFLLRKYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770275.1 | 0.0 | transcription factor MYB20-like | ||||
Swissprot | P81394 | 1e-75 | MYB15_ANTMA; Myb-related protein 315 | ||||
TrEMBL | A0A3Q7FBY6 | 1e-160 | A0A3Q7FBY6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g093740.2.1 | 1e-175 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 8e-80 | myb domain protein 40 |
Publications ? help Back to Top | |||
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