PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g038010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 43866.8 Da PI: 5.4153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.7 | 4.9e-32 | 55 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+P+d elv e+L++k+ + e ++ +i++++ i++++P++Lp +k++ ++++fF + ++yatgkrk+r+ Sopen02g038010.1 55 LPVGVKFDPSDAELV-EHLEAKCGVGNSEQHKfideFIPTLEvhegICYTHPENLP-GAKKDGSSVHFFYRITNAYATGKRKRRKihdennlm 145 799************.99****987774333322232333222334**********.556778899******************867777776 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ +W++tgk+k v++ +g ++g+kk++v+y+ + +k ekt+Wvmh+y+l Sopen02g038010.1 146 KEHVRWHKTGKTKVVME-NGFQKGCKKVMVLYQTlkKGSKQEKTNWVMHQYHL 197 66999**********99.999***********6433777888*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-37 | 40 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.021 | 55 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-14 | 56 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MGRSWLINGR GLASKVKNAS APAAHQIKDC GAKRQCPNCN YSIDNKDVSH EWPGLPVGVK 60 FDPSDAELVE HLEAKCGVGN SEQHKFIDEF IPTLEVHEGI CYTHPENLPG AKKDGSSVHF 120 FYRITNAYAT GKRKRRKIHD ENNLMKEHVR WHKTGKTKVV MENGFQKGCK KVMVLYQTLK 180 KGSKQEKTNW VMHQYHLGPD EDEKEGEYVV SKIFYQQQKQ SVKANDCCDN EEASVGANQT 240 GPTTPKTVTP NPHRDGETPS YDDILDESLP FSPDQEVEVA KEPGQPSDAK IKCEMEYSTC 300 LAGESQAADA NDVHNSLLCD EHNDYSLLDS FGPNLGPSVD YTHSTCHLPQ VNGNTTCGIS 360 ELDNLELDSP PDFQLADLPF GSQENIFSWL DRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | KRKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064131.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
Swissprot | Q6NQK2 | 5e-87 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3Q7FZU2 | 0.0 | A0A3Q7FZU2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g093420.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8175 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 2e-95 | NAC domain containing protein 44 |