PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g037700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18292.6 Da PI: 8.4595 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Sopen02g037700.1 28 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 77 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-36 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-21 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.904 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.40E-27 | 29 | 87 | No hit | No description |
Pfam | PF00847 | 8.5E-11 | 29 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEIGGGGQSG VAANSGVCCG GKRKNEKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYST 60 PVAAARAYDT AVYYLRGPSA RLNFPELLVG DGGLNDLSAA SIRKKAIEVG AQVDAVQNSL 120 ATHHNHTEEK VHSETASPSE LKPCWFQEKP DLNLKPEPED PEVDYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 29 | 92 | 15 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00276 | DAP | Transfer from AT2G23340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010315978.1 | 1e-121 | ethylene-responsive transcription factor RAP2-10 | ||||
Refseq | XP_015066067.1 | 1e-121 | ethylene-responsive transcription factor RAP2-10 | ||||
Swissprot | Q9SNE1 | 8e-51 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A3Q7FDJ0 | 1e-120 | A0A3Q7FDJ0_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010228 | 1e-119 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 3e-53 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
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