PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g037620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 319aa    MW: 35504.3 Da    PI: 10.1457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g037620.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.9e-32248305359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Sopen02g037620.1 248 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 305
                       99************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17198244IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-33234305IPR003657WRKY domain
PROSITE profilePS5081131.031241307IPR003657WRKY domain
SuperFamilySSF1182903.92E-27243305IPR003657WRKY domain
SMARTSM007742.7E-38246306IPR003657WRKY domain
PfamPF031062.7E-27248304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAVELMMDYR STRNNNNTNC INFVAKLEEK SVVQEAASGL ESVEKLIRLL SQSQSQQIQQ  60
QNKSPVEIEM VAEAAVTKFK KVISLLDRNR TGHARFRRAP LPSNSSKDFV DTKVYSPTPI  120
QQVPLITYDH FNPLVPKTIS FSYSPEMSRT NSFNISSLTG ETESKQHSSS NSAFQMTNLS  180
SQVSNSAGKP PLSSSSLKRK CSLSENVVSG KCSGSSGRCH CSKRRKLRLK RVVRVPAISM  240
KLSDIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERALDD PTMLIVTYEG  300
EHNHSLSVAE TSSLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22234306273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063634.10.0probable WRKY transcription factor 7
SwissprotQ9STX04e-95WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1P8NTF50.0A0A1P8NTF5_9SOLN; WRKY8
STRINGPGSC0003DMT4000642560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12202479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.16e-74WRKY DNA-binding protein 15