PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g037490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 371aa    MW: 40820.7 Da    PI: 8.0137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g037490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.61.9e-201661147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Sopen02g037490.1 16 KGPWSPEEDELLQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                      79******************************.***********985 PP
2Myb_DNA-binding574.6e-1870112347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sopen02g037490.1  70 AFTPEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 112
                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.761166IPR017930Myb domain
SuperFamilySSF466891.26E-3213109IPR009057Homeodomain-like
SMARTSM007175.7E-181564IPR001005SANT/Myb domain
PfamPF002493.7E-201661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-271769IPR009057Homeodomain-like
CDDcd001673.82E-171860No hitNo description
SMARTSM007173.8E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.46768117IPR017930Myb domain
CDDcd001672.62E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2370116IPR009057Homeodomain-like
PfamPF002491.5E-1570112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MANTTNSSKR DMDRVKGPWS PEEDELLQQL VQKHGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETII RAHARFGNKW ATIARLLNGR TDNAIKNHWN STLKRKCSSL  120
SADEGNELAD QLFENQQPPL KRSVSAGSAM PVSGFHFSPG SPSGSDSDSS LHVTSSSQSQ  180
VFKPVARTGG VFPPSIDISS PPVDPPTSLS LSLPGVDLAE SSNRSADSTP SKNPFQLLLP  240
SMQIPPPPPP PPPSLATTVP FERVSAIQQS LQNPDFGQNA GGGEQPDKVF VPFSQELLGV  300
MQEMIKTEVR NYMMGVEQKQ QYQQQHYQQP QQFQQQNHQL PSGLGLGLCM QQASDGFRDR  360
AANRMGLSKF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-41151163104C-Myb DNA-Binding Domain
1msf_C8e-41151163104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065794.10.0transcription factor MYB44-like
TrEMBLM1CC460.0M1CC46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000643060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-80myb domain protein r1