PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen02g037120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23983.3 Da PI: 7.3662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.8 | 2.6e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+ye+ r+ +Pv+Gavg++++++++++ Sopen02g037120.1 2 SCNGCRVLRKGCSDNCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEGAGRTVNPVNGAVGLLWTGNWHVC 94 6******************************************************************************************** PP DUF260 89 qlkaelall 97 q+++e++l+ Sopen02g037120.1 95 QAAVETVLR 103 ***999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.882 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLYE GAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASVEI 120 DEVSDCTDVF KLQDPSLNMR PKMQKRRRSL EETSMLDLSL TPGFNQKVYN SHPLPENHRR 180 PGTPSMNSEE SGTTTCFESS AVIGDHQGKE PKLLSLFN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 140 | 146 | PKMQKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063806.1 | 1e-163 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 4e-80 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A3Q7FBF8 | 1e-160 | A0A3Q7FBF8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092550.2.1 | 1e-160 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-82 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
---|---|---|---|
|