PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 330aa    MW: 37652 Da    PI: 7.4939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl
  Sopen02g036550.1 14 RGPWSPEEDSKLKAYIEQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                      89*********************************************97 PP
2Myb_DNA-binding38.92e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Sopen02g036550.1  69 GEFTDEEDNIICTLYMSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.976962IPR017930Myb domain
SuperFamilySSF466893.96E-2711109IPR009057Homeodomain-like
SMARTSM007174.6E-131364IPR001005SANT/Myb domain
PfamPF002498.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-251569IPR009057Homeodomain-like
CDDcd001677.55E-101662No hitNo description
PROSITE profilePS5129421.84263117IPR017930Myb domain
SMARTSM007175.1E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2470117IPR009057Homeodomain-like
CDDcd001673.05E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKAYIE QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDNIIC TLYMSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLLC  120
NKQRKDQRPR TGSYINHNKL EMMKEHENFF ATHQTINNAY SWPSQQILFS TLIAPQNHDL  180
AESSSANSHN FQYSSTDQVY FSQDQLCQIS STNQLPSMNL VNGNTCNMVS NGYYPSNGVV  240
INNGLQEYNN YNSVGLDHDA LNSTSTTHSQ QVDKSVLEMV NSSTISTTSQ DQSTSWEELS  300
PLVNYPPSVF ETVSPYYVFE EQRYMGLLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065285.10.0transcription factor RAX3-like
TrEMBLA0A3Q7FB390.0A0A3Q7FB39_SOLLC; Uncharacterized protein
STRINGSolyc02g091980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-80myb domain protein 84