PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 320aa    MW: 35949.5 Da    PI: 7.1016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13131178355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+r+ ++f  L +l+P++     kKl+Ka++L  A++YIk+L+
  Sopen02g036390.1 131 QDHVLAERKRRERLTKRFIALSTLIPNL-----KKLDKATVLGDAIQYIKELE 178
                       56999***********************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-11131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-18132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-13133182No hitNo description
SuperFamilySSF474592.75E-17133196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDTWWSEMET SNMNDHNFVN QSQTMTQFNE FPFNSKPFST FSPPPPPPSN VISNYSYSNS  60
MSTKNQFENL NTFKVVKREV PSGTTINFSS SVNSMEDSDF GDIEAAMGFG AAITTTTDQK  120
KSYNRTSVQA QDHVLAERKR RERLTKRFIA LSTLIPNLKK LDKATVLGDA IQYIKELEEQ  180
VKTLEEKNKK CSEEPVIPPA KRPRLVSSCA DSSSSDEISS VSTVCTDRSL PDIEVRASDG  240
NILIRIYCKK QNGMMKEIFN EVEKLHLSII SCSVMPFGYN TSHVTIIAQM DHKLTSNTPN  300
HVANRIRAAM VKEEANSFTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065508.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7FCK40.0A0A3Q7FCK4_SOLLC; Uncharacterized protein
STRINGSolyc02g091810.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-41bHLH family protein