PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g035670.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 942aa MW: 107148 Da PI: 4.088 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 88.3 | 7.8e-28 | 1 | 79 | 21 | 99 |
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdfl divp + Sopen02g035670.5 1 MPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDFLSDIVPLQ 79 7***************************************************************************976 PP | |||||||
2 | NF-YC | 98.9 | 3.7e-31 | 196 | 296 | 2 | 99 |
NF-YC 2 lksfwekqiekat..dfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 l fw++q e+ d k + e+Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdf Sopen02g035670.5 196 LSCFWNQQKEEILraDPKrKPEMPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDF 288 778*****99865115554779*********************************************************************** PP NF-YC 92 lvdivprd 99 l divp + Sopen02g035670.5 289 LSDIVPLQ 296 *****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.8E-22 | 1 | 77 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-8 | 1 | 62 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.47E-17 | 2 | 80 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.92E-18 | 200 | 297 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-8 | 217 | 279 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.8E-22 | 218 | 294 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 942 aa Download sequence Send to blast |
MPLSRIRRAM KSNDQVKMVS ATSTVLLSKA IEMLIMDLTL RAWMQADKGK CRTLKRYDFA 60 RAIRDEELFD FLSDIVPLQT YKVQKDANDG QGNESHPAYQ VLEPSNIPIL GLLSGNDEEE 120 PPFSPDMIQY REDMDFDSSL MELPKSSSAL PSELQRPICM HSSMPSMHSS MPSNNKIQQD 180 EDERDPKFMQ LLKENLSCFW NQQKEEILRA DPKRKPEMPL SRIRRAMKSN DQVKMVSATS 240 TVLLSKAIEM LIMDLTLRAW MQADKGKCRT LKRYDFARAI RDEELFDFLS DIVPLQTYKV 300 QKDANDGQGN ESHPAYQVLE PSNIPVEEDL NGSQGNEFHP VCQMVQPNNI PASFISNQGI 360 PVPLVDLFPE FEFNSHDFLM EEANDVQGNK FHLANQMVQL HNIPVQGEEN DGQGNEFEPA 420 SNVQPDNIPL YQFQVRRKEN DGQGNEFNQA SNVQPDNIPL YQFRVRRKEN DGQGNEFNQA 480 SNVQPDNIPV RGGQNDYQGN EFEPPNVQPI NIPLQQLYQF QVRGEENNGQ SNEFDPASNV 540 QPNNNPLYQF PARGEENDGQ ENKFEPASNV QPNNIPVRGE ENDGQGNEFN QASNVFNTSL 600 LYQFQVRGEE NDGQGNKFNQ AFNIQPDNIP LYQFQVRGGE NDYQSNEFEP PSNVQPNNIP 660 QLYQFQVRGE ENDGQGNEFD PASNVQPNNI PPDNITVQQL YQFQVRGGEN DYQGNEFEPP 720 SNVQPINIPL QQLYQFLVRG EENDGQGNEF DPASNVQPNN ITVRGGENDY QGNEFEPPSN 780 VQPINIPSMY QFLVRGEEND GQGKEFNQAS NVFDIPLLYQ FQVRGEENDG QGNEFNQAFN 840 VQPDNIPQLY QFQVRGGEND YQGNEFEPPS NVQPINIPFQ VQAEANDGQG NEFHPTYQMG 900 QPNNIPASFI IPEPLMLPPL INSSPEPEFD IDEFLMEIEE GL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 4e-19 | 1 | 294 | 41 | 118 | HapE |
4g92_C | 4e-19 | 1 | 294 | 41 | 118 | HapE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215449 | 1e-106 | AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence. | |||
GenBank | HG975441 | 1e-106 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-106 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770734.1 | 0.0 | uncharacterized protein LOC107011160 isoform X34 | ||||
TrEMBL | A0A3Q7FAB5 | 0.0 | A0A3Q7FAB5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g091030.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 9e-26 | nuclear factor Y, subunit C4 |