PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g035670.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 945aa MW: 107517 Da PI: 4.088 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 88.3 | 7.8e-28 | 1 | 79 | 21 | 99 |
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdfl divp + Sopen02g035670.4 1 MPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDFLSDIVPLQ 79 7***************************************************************************976 PP | |||||||
2 | NF-YC | 98.9 | 3.7e-31 | 196 | 296 | 2 | 99 |
NF-YC 2 lksfwekqiekat..dfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 l fw++q e+ d k + e+Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdf Sopen02g035670.4 196 LSCFWNQQKEEILraDPKrKPEMPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDF 288 778*****99865115554779*********************************************************************** PP NF-YC 92 lvdivprd 99 l divp + Sopen02g035670.4 289 LSDIVPLQ 296 *****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.9E-22 | 1 | 77 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.0E-8 | 1 | 62 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.47E-17 | 2 | 80 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.92E-18 | 200 | 297 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-8 | 217 | 279 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.9E-22 | 218 | 294 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 945 aa Download sequence Send to blast |
MPLSRIRRAM KSNDQVKMVS ATSTVLLSKA IEMLIMDLTL RAWMQADKGK CRTLKRYDFA 60 RAIRDEELFD FLSDIVPLQT YKVQKDANDG QGNESHPAYQ VLEPSNIPIL GLLSGNDEEE 120 PPFSPDMIQY REDMDFDSSL MELPKSSSAL PSELQRPICM HSSMPSMHSS MPSNNKIQQD 180 EDERDPKFMQ LLKENLSCFW NQQKEEILRA DPKRKPEMPL SRIRRAMKSN DQVKMVSATS 240 TVLLSKAIEM LIMDLTLRAW MQADKGKCRT LKRYDFARAI RDEELFDFLS DIVPLQTYKV 300 QKDANDGQGN ESHPAYQVLE PSNIPVEEDL NGSQGNEFHP VCQMVQPNNI PASFISNQGI 360 PVPLVDLFPE FEFNSHDFLM EEANDVQGNK FHLANQMVQL HNIPVQGEEN DGQGNEFEPA 420 SNVQPDNIPL YQFQVRRKEN DGQGNEFNQA SNVQPDNIPL YQFRVRRKEN DGQGNEFNQA 480 SNVQPDNIPV RGGQNDYQGN EFEPPNVQPI NIPLQQLYQF QVRGEENNGQ SNEFDPASNV 540 QPNNNPLQQL YQFPARGEEN DGQENKFEPA SNVQPNNIPV RGEENDGQGN EFNQASNVFN 600 TSLLYQFQVR GEENDGQGNK FNQAFNIQPD NIPLYQFQVR GGENDYQSNE FEPPSNVQPN 660 NIPQLYQFQV RGEENDGQGN EFDPASNVQP NNIPPDNITV QQLYQFQVRG GENDYQGNEF 720 EPPSNVQPIN IPLQQLYQFL VRGEENDGQG NEFDPASNVQ PNNITVRGGE NDYQGNEFEP 780 PSNVQPINIP SMYQFLVRGE ENDGQGKEFN QASNVFDIPL LYQFQVRGEE NDGQGNEFNQ 840 AFNVQPDNIP QLYQFQVRGG ENDYQGNEFE PPSNVQPINI PFQVQAEAND GQGNEFHPTY 900 QMGQPNNIPA SFIIPEPLML PPLINSSPEP EFDIDEFLME IEEGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 4e-19 | 1 | 294 | 41 | 118 | HapE |
4g92_C | 4e-19 | 1 | 294 | 41 | 118 | HapE |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215449 | 1e-106 | AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence. | |||
GenBank | HG975441 | 1e-106 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 1e-106 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770734.1 | 0.0 | uncharacterized protein LOC107011160 isoform X34 | ||||
TrEMBL | A0A3Q7FAB5 | 0.0 | A0A3Q7FAB5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g091030.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13918 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-25 | nuclear factor Y, subunit C4 |