PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g035670.3

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 943aa MW: 107276 Da PI: 4.088

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g035670.3	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	88.3	7.8e-28	1	79	21	99
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdfl divp + Sopen02g035670.3 1 MPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDFLSDIVPLQ 79 7***************************************************************************976 PP
2	NF-YC	98.9	3.7e-31	196	296	2	99
NF-YC 2 lksfwekqiekat..dfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 l fw++q e+ d k + e+Pl+ri++ +k++++vkm+sa + vllska e++i++ltlr+w++a++ k rtlk+ d a a+ + fdf Sopen02g035670.3 196 LSCFWNQQKEEILraDPKrKPEMPLSRIRRAMKSNDQVKMVSATSTVLLSKAIEMLIMDLTLRAWMQADKGKCRTLKRYDFARAIRDEELFDF 288 778***99865115554779******************************************************************* PP NF-YC 92 lvdivprd 99 l divp + Sopen02g035670.3 289 LSDIVPLQ 296 ***976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.0E-8	1	62	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.8E-22	1	77	IPR009072	Histone-fold
SuperFamily	SSF47113	5.47E-17	2	80	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-18	200	297	IPR009072	Histone-fold
Pfam	PF00808	1.2E-8	217	279	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.8E-22	218	294	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MPLSRIRRAM KSNDQVKMVS ATSTVLLSKA IEMLIMDLTL RAWMQADKGK CRTLKRYDFA 60 RAIRDEELFD FLSDIVPLQT YKVQKDANDG QGNESHPAYQ VLEPSNIPIL GLLSGNDEEE 120 PPFSPDMIQY REDMDFDSSL MELPKSSSAL PSELQRPICM HSSMPSMHSS MPSNNKIQQD 180 EDERDPKFMQ LLKENLSCFW NQQKEEILRA DPKRKPEMPL SRIRRAMKSN DQVKMVSATS 240 TVLLSKAIEM LIMDLTLRAW MQADKGKCRT LKRYDFARAI RDEELFDFLS DIVPLQTYKV 300 QKDANDGQGN ESHPAYQVLE PSNIPVEEDL NGSQGNEFHP VCQMVQPNNI PASFISNQGI 360 PVPLVDLFPE FEFNSHDFLM EEANDVQGNK FHLANQMVQL HNIPVQGEEN DGQGNEFEPA 420 SNVQPDNIPL YQFQVRRKEN DGQGNEFNQA SNVQPDNIPL YQFRVRRKEN DGQGNEFNQA 480 SNVQPDNIPV RGGQNDYQGN EFEPPNVQPI NIPLQQLYQF QVRGEENNGQ SNEFDPASNV 540 QPNNNPQLYQ FPARGEENDG QENKFEPASN VQPNNIPVRG EENDGQGNEF NQASNVFNTS 600 LLYQFQVRGE ENDGQGNKFN QAFNIQPDNI PLYQFQVRGG ENDYQSNEFE PPSNVQPNNI 660 PQLYQFQVRG EENDGQGNEF DPASNVQPNN IPPDNITVQQ LYQFQVRGGE NDYQGNEFEP 720 PSNVQPINIP LQQLYQFLVR GEENDGQGNE FDPASNVQPN NITVRGGEND YQGNEFEPPS 780 NVQPINIPSM YQFLVRGEEN DGQGKEFNQA SNVFDIPLLY QFQVRGEEND GQGNEFNQAF 840 NVQPDNIPQL YQFQVRGGEN DYQGNEFEPP SNVQPINIPF QVQAEANDGQ GNEFHPTYQM 900 GQPNNIPASF IIPEPLMLPP LINSSPEPEF DIDEFLMEIE EGL

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MPLSRIRRAM KSNDQVKMVS ATSTVLLSKA IEMLIMDLTL RAWMQADKGK CRTLKRYDFA  60
RAIRDEELFD FLSDIVPLQT YKVQKDANDG QGNESHPAYQ VLEPSNIPIL GLLSGNDEEE  120
PPFSPDMIQY REDMDFDSSL MELPKSSSAL PSELQRPICM HSSMPSMHSS MPSNNKIQQD  180
EDERDPKFMQ LLKENLSCFW NQQKEEILRA DPKRKPEMPL SRIRRAMKSN DQVKMVSATS  240
TVLLSKAIEM LIMDLTLRAW MQADKGKCRT LKRYDFARAI RDEELFDFLS DIVPLQTYKV  300
QKDANDGQGN ESHPAYQVLE PSNIPVEEDL NGSQGNEFHP VCQMVQPNNI PASFISNQGI  360
PVPLVDLFPE FEFNSHDFLM EEANDVQGNK FHLANQMVQL HNIPVQGEEN DGQGNEFEPA  420
SNVQPDNIPL YQFQVRRKEN DGQGNEFNQA SNVQPDNIPL YQFRVRRKEN DGQGNEFNQA  480
SNVQPDNIPV RGGQNDYQGN EFEPPNVQPI NIPLQQLYQF QVRGEENNGQ SNEFDPASNV  540
QPNNNPQLYQ FPARGEENDG QENKFEPASN VQPNNIPVRG EENDGQGNEF NQASNVFNTS  600
LLYQFQVRGE ENDGQGNKFN QAFNIQPDNI PLYQFQVRGG ENDYQSNEFE PPSNVQPNNI  660
PQLYQFQVRG EENDGQGNEF DPASNVQPNN IPPDNITVQQ LYQFQVRGGE NDYQGNEFEP  720
PSNVQPINIP LQQLYQFLVR GEENDGQGNE FDPASNVQPN NITVRGGEND YQGNEFEPPS  780
NVQPINIPSM YQFLVRGEEN DGQGKEFNQA SNVFDIPLLY QFQVRGEEND GQGNEFNQAF  840
NVQPDNIPQL YQFQVRGGEN DYQGNEFEPP SNVQPINIPF QVQAEANDGQ GNEFHPTYQM  900
GQPNNIPASF IIPEPLMLPP LINSSPEPEF DIDEFLMEIE EGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_C	4e-19	1	294	41	118	HapE
4g92_C	4e-19	1	294	41	118	HapE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215449	1e-106	AC215449.3 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0022J22, complete sequence.
GenBank	HG975441	1e-106	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	1e-106	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027770734.1	0.0	uncharacterized protein LOC107011160 isoform X34
TrEMBL	A0A3Q7FAB5	0.0	A0A3Q7FAB5_SOLLC; Uncharacterized protein
STRING	Solyc02g091030.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	9e-26	nuclear factor Y, subunit C4