PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g035430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 24254.1 Da PI: 4.6866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 88 | 137 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 ++GVr+++ +g+W+AeIrdp + +r +lg+f tae+Aa+a+++ + +++ge Sopen02g035430.1 88 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDKKAIEFRGE 137 8*******.**********7.....337*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.2E-36 | 87 | 150 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 87 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.525 | 87 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 88 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 88 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-22 | 88 | 145 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.25E-32 | 88 | 146 | No hit | No description |
PRINTS | PR00367 | 6.5E-11 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTTLCEDSLL EQENVSYTLT HKLTQEQENY YMVSALRHVA SGTGDDGEAA QLLLEVENAS 60 SGNLPCRSID VELEKGKKRK KRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFATA 120 EDAARAYDKK AIEFRGERAK TNFPITEYAA VNDEINMSPT VVMEEEKELI QVTNGENRSN 180 SMQNCDEDDF WETLEDDALV KQITQNMILY SP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-23 | 86 | 145 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 80 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770031.1 | 1e-143 | uncharacterized protein LOC107010195 | ||||
TrEMBL | M0ZXU0 | 7e-99 | M0ZXU0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400010297 | 1e-99 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 8e-28 | ERF family protein |