PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g035420.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 195aa    MW: 21713.2 Da    PI: 5.9106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g035420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1868117356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                       ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++ge
  Sopen02g035420.1  68 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAIEFRGE 117
                       8*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3167125IPR001471AP2/ERF domain
SMARTSM003802.6E-3567130IPR001471AP2/ERF domain
PROSITE profilePS5103223.34167124IPR001471AP2/ERF domain
PRINTSPR003679.8E-116879IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2268126IPR016177DNA-binding domain
CDDcd000183.80E-3068126No hitNo description
PfamPF008473.7E-1168117IPR001471AP2/ERF domain
PRINTSPR003679.8E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVSALRHVVS GSGDVRADGE AAQLLLEDQN ASGGSSSTSA ISMPRRSSIN VELGKGKKRR  60
RRNMKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFVTA EDAARAYDKK AIEFRGERAK  120
TNFPISEYTA RAINDEINKL TSVVTEEERE LLVQVLNGGD VAVNGENSST MQDGDEDDFW  180
ETLEDDGLVK WICSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2266125464ATERF1
3gcc_A6e-2266125464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770031.11e-118uncharacterized protein LOC107010195
TrEMBLA0A3Q7FY901e-107A0A3Q7FY90_SOLLC; Uncharacterized protein
STRINGSolyc02g090790.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-26ERF family protein