PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g035400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 23160.7 Da PI: 6.5147 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 89 | 137 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+W+AeIrdp + +r +lg+f tae+Aa+a+++ + +++g Sopen02g035400.1 89 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAVEFRG 137 8*******.**********7.....337**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-34 | 88 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 88 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-10 | 89 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 89 | 147 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.00E-29 | 89 | 147 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MDNLCSFTHK LTHQQESHYM VSALKHVFSG AAVDGRADGE AAQLLWEVEN AATSDNPMPR 60 RSINVHPVHV ELESGKKKQR RRRNTKKEFR GVRQRPWGKW AAEIRDPHKA QRLWLGTFVT 120 AEDAARAYDK KAVEFRGNKA KTNFPISEYI DDHDNSSPMM IVEEHENDQN VMNGDDDNGD 180 DFWATLEDDR LVKFITQDMS H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 87 | 146 | 4 | 64 | ATERF1 |
3gcc_A | 2e-21 | 87 | 146 | 4 | 64 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065485.1 | 1e-151 | ethylene-responsive transcription factor ERF095-like | ||||
TrEMBL | A0A3Q7FCG6 | 1e-133 | A0A3Q7FCG6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g090770.1.1 | 1e-134 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-28 | ERF family protein |