PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g034520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 27324.8 Da PI: 10.3089 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.2 | 7e-39 | 62 | 182 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 ++kkdrh ki T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s++++ + s +++n+++++++ ++ Sopen02g034520.1 62 PVKKDRHTKILTSQGHRDRRVRLSIGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKSTPS-----SINNNNNNNNSECDED 149 68**************************************************************55555222.....2333333444556666 PP TCP 95 akskksqksaasalnlakesrakarararertrekmri 132 + ++k ++ ++srakarararert +k + Sopen02g034520.1 150 MIVPLAKKAKQ-----ERDSRAKARARARERTIKKIWT 182 54444444444.....679*************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-35 | 63 | 147 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.327 | 64 | 122 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.497 | 162 | 179 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MFPFGNSSNG NPILHSSFLN NQILLHQHDL PTHHHYLAAA NGHLIDSYAT NNVVINNKRK 60 KPVKKDRHTK ILTSQGHRDR RVRLSIGVAR KFFDLQDMLG YDKPSKTLDW LFTKSKLAIE 120 DLINDVSKKS TPSSINNNNN NNNSECDEDM IVPLAKKAKQ ERDSRAKARA RARERTIKKI 180 WTQIAPNREA TASHYNNSTR NWNHDDVNPT IMSSMDASTI CCTSLPIVQK AWDSYHGSQI |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065569.1 | 1e-180 | transcription factor CYCLOIDEA-like | ||||
TrEMBL | G3BGU7 | 1e-152 | G3BGU7_SOLLC; TCP transcription factor 7 | ||||
STRING | Solyc02g089830.1.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-30 | TCP family protein |