PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g033990.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28593.4 Da PI: 8.2916 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.7 | 4.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++gklye++s Sopen02g033990.2 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 91.1 | 2e-30 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + ++ + +++s+++e+ kLk+++e+Lqr qRhllG++L++L++ +L++Le qL++slk+iRs++++++l+q+++lq kek +e+nk L++ Sopen02g033990.2 78 LEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLER 170 56666677889*********************************************************************************9 PP K-box 97 klee 100 k +e Sopen02g033990.2 171 KQME 174 9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.347 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.20E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.5E-25 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.908 | 88 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0071492 | Biological Process | cellular response to UV-A | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALLVFSN RGKLYEFCST 60 NNMLKTLDRY QKCSYGTLEV NRSIKDNEQS SYREYLKLKA KYESLQRYQR HLLGDELGPL 120 TIDDLEHLEV QLDTSLKHIR STRTQMMLDQ LSDLQTKEKL WNEANKVLER KQMEEIYAEN 180 NMQQAWGGGE QSLNYGQQQH PQSQGFFQPL ECNSSLQIGF DPITTSSQIT AVTNAQNVNG 240 MIPGWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-27 | 75 | 168 | 1 | 97 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-27 | 75 | 168 | 1 | 97 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-27 | 75 | 168 | 1 | 97 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-27 | 75 | 168 | 1 | 97 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ302015 | 0.0 | AJ302015.1 Lycopersicon esculentum mRNA for MADS-box protein (TM29 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064043.1 | 0.0 | developmental protein SEPALLATA 1-like isoform X1 | ||||
Swissprot | Q8LLR2 | 1e-128 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | Q8VXG0 | 0.0 | Q8VXG0_SOLLC; MADS-box protein | ||||
STRING | Solyc02g089200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 5e-99 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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