PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g033790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 283aa MW: 31854.2 Da PI: 7.1978 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.2 | 3.7e-31 | 45 | 179 | 2 | 98 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssss 69 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ + + Sopen02g033790.1 45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqippgslnpnlypmlgnshqittnkE--- 134 689*************************************************************44444333333333322222221110... PP TCP 70 aseceaesssssasnsssg..................................kaaksaaksk 98 g ++++++ +++ Sopen02g033790.1 135 ------------------GrinwdnnipleppnnnalgynpnffkwdpsnlslAHSENSLSHQ 179 ..................122344444455555556666666666666444332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.0E-28 | 47 | 117 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.353 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MITREDKGNV VNDDGNKSKA CTTSNSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL 60 RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKN EIDELPPLQI PPGSLNPNLY 120 PMLGNSHQIT TNKEGRINWD NNIPLEPPNN NALGYNPNFF KWDPSNLSLA HSENSLSHQH 180 DHHQNFNLMS SMPLTSHHQP VVYPPGLPQF FHQHNNINVG ASSSSEFDPK EINFQMLSNN 240 SGSENPMSTS TNSFRHSIDS TNQSIRPFHF LPSQNCDDTE PSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064545.1 | 0.0 | transcription factor TCP17 isoform X1 | ||||
TrEMBL | G3BGU5 | 0.0 | G3BGU5_SOLLC; TCP transcription factor 5 | ||||
STRING | Solyc02g089020.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 8e-48 | plastid transcription factor 1 |