PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g033030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 460aa    MW: 51198.8 Da    PI: 7.1301
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g033030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30218273359
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vk se+prsYY+Ct+ +C vkkkvers  d++++eitY+g+Hnh+
  Sopen02g033030.1 218 DGYNWRKYGQKKVKASECPRSYYKCTYLKCLVKKKVERSV-DGHITEITYNGRHNHD 273
                       9***************************************.***************7 PP
2WRKY105.52.8e-33386444159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Sopen02g033030.1 386 LDDGYKWRKYGQKVVKGTQHPRSYYRCTYPGCNVRKQVERASTDPKAVITTYEGKHNHD 444
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-26213275IPR003657WRKY domain
SuperFamilySSF1182902.35E-23215275IPR003657WRKY domain
SMARTSM007741.6E-32216274IPR003657WRKY domain
PROSITE profilePS5081122.653218275IPR003657WRKY domain
PfamPF031064.0E-22218273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-36372446IPR003657WRKY domain
SuperFamilySSF1182901.31E-29378446IPR003657WRKY domain
PROSITE profilePS5081135.645381446IPR003657WRKY domain
SMARTSM007743.9E-39386445IPR003657WRKY domain
PfamPF031062.6E-26387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGETGEASAI SFPSLTMPPR PSFESFFNMS SFSPGPISLV SSFLSDQSPD SADCPPSFSQ  60
LLAGYEYSGD PPGCQKNSGY NQNRSVNPQL FIVPSGLSPS GFLNSPGFLS PLQSPFGMSH  120
QQALAHVTAQ AEFSTSYMQM QMQMQAQDQC SSQVAPVEAL GHELSIDPKE SSLQIKERLQ  180
TSLDNKPSDN QGKQFEQLEV SQSENKTSFG ALDKPACDGY NWRKYGQKKV KASECPRSYY  240
KCTYLKCLVK KKVERSVDGH ITEITYNGRH NHDQPTKRRK NGSALDNTDC FGVRSDISTH  300
DWTVLNSSHG SSPSRSDQVP TQMVSELLVK RECDETESYL IDVDDEGHDE PDAKRTKTAI  360
ETVASSHVTV AESKIVLQTR SEVDFLDDGY KWRKYGQKVV KGTQHPRSYY RCTYPGCNVR  420
KQVERASTDP KAVITTYEGK HNHDIPTVSV RNRGTRNKYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35218446877Probable WRKY transcription factor 4
2lex_A1e-35218446877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111270.0AB711127.1 Solanum tuberosum StWRKY15 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066320.10.0probable WRKY transcription factor 3
TrEMBLA0A1P8NTG20.0A0A1P8NTG2_9SOLN; WRKY3
STRINGSolyc02g088340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-101WRKY DNA-binding protein 3