PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g033000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 414aa    MW: 46172.9 Da    PI: 4.3813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g033000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.8e-194796255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sopen02g033000.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                      789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.94E-3246103No hitNo description
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2747103IPR001471AP2/ERF domain
PfamPF008471.0E-134796IPR001471AP2/ERF domain
SMARTSM003801.6E-3547110IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1947104IPR016177DNA-binding domain
PRINTSPR003676.1E-84859IPR001471AP2/ERF domain
PRINTSPR003676.1E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MARKRRASEA LGEKIRDGDQ GNVVWDEMVK ETGVAAALGG ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSSSS SSTPALPSKI  120
SNLLINRLKA RNNSLAAAAA AAAASSSSSD SSEPVEIHDQ DKHGEEFKEE EAYFSDSQYM  180
EYLKDPEDVI TENNMISNMS ANNVSNFTNT LEACLSDNDY SVIQPVKSDE NSINNMMKVY  240
SEEEIEEVGD VEVEPIDFQF VDEIGSSCYY SAFEEMNSSE TMEEGIIYGD EPSMLSEAMR  300
RMNYERKFSA SLYAFNGITE CLKLKLKSGV MQREGCEQIS RLRNACKRNR NNEEEEEKKI  360
HKKDSEYSSE SPSETGPSPE TGSSSSTISD ETTYDSELSL WSSIDLPPIC AFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-12471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065313.10.0ethylene-responsive transcription factor ERN1-like
TrEMBLM0ZLL20.0M0ZLL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000034030.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11