PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g032700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33505.4 Da PI: 6.7739 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv v+++G+g+W+t++ + g++R+ k+c++rw +yl Sopen02g032700.1 14 KGPWTPEEDIMLVSFVQEHGPGNWRTVPTHTGLRRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.7e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Sopen02g032700.1 67 RGSFSHQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.975 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.03E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.686 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-10 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRPPCCDKT GVKKGPWTPE EDIMLVSFVQ EHGPGNWRTV PTHTGLRRCS KSCRLRWTNY 60 LRPGIKRGSF SHQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE 120 TSDLYSNDGH CLSTFNSTSR GQWERTLQAD INTAKQALQN ALSLDKSSPI SDYTIPDIGC 180 YPFIKQEAKM STTTYASSAE NIAKLLKQWT RSESTNDSEQ SKASSSTQFS CNTNNNAMTE 240 YSSSFEPSNS DQFSQATTPE AAGKFHGESK REMDDEIQLS VMLESWLFDE NDDLLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063800.1 | 0.0 | transcription factor MYB94-like | ||||
Swissprot | Q9SN78 | 1e-103 | MYB94_ARATH; Transcription factor MYB94 | ||||
TrEMBL | A0A3Q7FWM2 | 0.0 | A0A3Q7FWM2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g087960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 1e-99 | myb domain protein 94 |
Publications ? help Back to Top | |||
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