PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g032560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34610.4 Da    PI: 6.5098
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g032560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-1887140356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Sopen02g032560.1  87 KKRRLNMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 140
                       456899***********************************************9 PP
2HD-ZIP_I/II130.95.1e-4286177192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++el+
  Sopen02g032560.1  86 EKKRRLNMEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHSELQ 177
                       69***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.6E-1885146IPR001356Homeobox domain
SuperFamilySSF466898.13E-1985144IPR009057Homeodomain-like
PROSITE profilePS5007116.56886142IPR001356Homeobox domain
CDDcd000861.76E-1687143No hitNo description
PfamPF000462.3E-1587140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-1989150IPR009057Homeodomain-like
PRINTSPR000311.8E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.8E-5122138IPR000047Helix-turn-helix motif
CDDcd146860.00605133177No hitNo description
PfamPF021838.8E-15142183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFLPSTPDI SLNFQDNNHH LPSTSPKLFP SPSLPHQDHF NHGVPSMLMR RSMSFSGVER  60
CDNHHDLRVD DNELSDEDGS SQLLGEKKRR LNMEQVKALE RSFEVANKLE PERKIQLARA  120
LGLQPRQIAI WFQNRRARWK TKQLEKDYEM LKRHFDSLKT DNDALKAQNK ELHSELQLLS  180
VKKRESSGGG GIMFNLNKEN EGCWSNNGSD DNNNNNNSID VNLGTRTSSG DSPFYSKNVF  240
PPEPGPVPLA QFLQTSSTPP DHLTHCHKNI DPTVQNEGFC NMFTPVDDHT NFWPWPEQQH  300
FN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0129220.0BT012922.1 Lycopersicon esculentum clone 114085R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063778.10.0homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-71HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A3Q7FAA50.0A0A3Q7FAA5_SOLLC; Uncharacterized protein
STRINGSolyc02g087840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-66HD-ZIP family protein