PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g031450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 196aa    MW: 22777.3 Da    PI: 8.7295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g031450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.5e-181562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
  Sopen02g031450.1 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                      79********************************************97 PP
2Myb_DNA-binding54.72.4e-1768111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Sopen02g031450.1  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 111
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-23865IPR009057Homeodomain-like
PROSITE profilePS5129415.771062IPR017930Myb domain
SuperFamilySSF466892.66E-3013109IPR009057Homeodomain-like
SMARTSM007171.0E-121464IPR001005SANT/Myb domain
PfamPF002492.9E-161562IPR001005SANT/Myb domain
CDDcd001679.97E-101762No hitNo description
PROSITE profilePS5129425.31663117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2566117IPR009057Homeodomain-like
SMARTSM007173.4E-1567115IPR001005SANT/Myb domain
PfamPF002492.9E-1668111IPR001005SANT/Myb domain
CDDcd001671.51E-1172111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDKRTCDSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNFWR TRIQKHIKQA  120
ENINRLSSEH NNIQQASTSQ TSTSLADSME TYSGNNNNNN NNNMGTTFHH QGNFPNENIW  180
SMEDLWSMQL LNDANN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065398.11e-144myb-related protein 340-like
SwissprotP813963e-96MYB40_ANTMA; Myb-related protein 340
TrEMBLA0A0V0HAZ91e-130A0A0V0HAZ9_SOLCH; Putative myb-related protein-like
STRINGPGSC0003DMT4000012781e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-80myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]