PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g030580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 271aa    MW: 29295.1 Da    PI: 7.8702
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g030580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.92.5e-314107199
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+
  Sopen02g030580.1   4 SCNGCRVLRKGCSESCTIRPCLqwiktPDSQSNATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallke 99 
                       q ++e++l ++
  Sopen02g030580.1  97 QNAVEAVLKGT 107
                       ****9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381559.9E-881271IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8233109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCT IRPCLQWIKT PDSQSNATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGTPIT PIASEIAVNN  120
NGPPLKLPYD IRHINKDENS TKSSELHRVR TRCRFKRSGA NTKATKSNPV CSGSGDELAH  180
EKMNGSTSHE SSLSHQSEEE AAAAAAAAMN VECDSSGMAE VEDSAKEVEL ELTLGFSSLG  240
TVDSKPKETK RNKDVQSVNG AGECKIELGL H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065225.10.0LOB domain-containing protein 40
SwissprotQ9M8861e-90LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7F9Y30.0A0A3Q7F9Y3_SOLLC; Uncharacterized protein
STRINGSolyc02g085910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-88LOB domain-containing protein 41