PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g030270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 536aa    MW: 59456.5 Da    PI: 5.4884
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g030270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.39e-1021755352374
              GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      +a +++++s+++++++++++k+fs++sPi+ f
  Sopen02g030270.1 175 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRPSSSSDVIQTIKSYKIFSNISPIPMF 261
                       678*************************999************************......888999999999******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                       s +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+++++
  Sopen02g030270.1 262 SSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPILRITALVPEE--YAVESRLIRENLTQFARELNIGFEIDFVL 352
                       ****************************************877666689***********66..99999************************ PP

              GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.e 272
                        +++e l+++++++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +++ sF + +++ le+ys+l++sl +
  Sopen02g030270.1 353 IRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNELRRISPNVVVHVDSEglMGYGAMSFRQTVIDGLEFYSTLLESLeA 436
                       ******************************98......3...48*******************87788***********************88 PP

              GRAS 273 aklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                       a+++  +  ++++k+E+++l ++iv+++ + g++        ++W++++ +aGF+pv ls++a  qa++ll +v+++g++v +++++++l+W+
  Sopen02g030270.1 437 ANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWKDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQAEMLLCWH 524
                       999999999**********************998.....999*************************************************** PP

              GRAS 364 drpLvsvSaWr 374
                       dr+Lv++SaWr
  Sopen02g030270.1 525 DRALVATSAWR 535
                       **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.247148515IPR005202Transcription factor GRAS
PfamPF035143.1E-99175535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLINSN NTFTFPAATN GSNLCYEPKS VLELRRSPSP IVDKQIITTN  60
PDLSALCGGE DPLQLGDHVL SNFEDWDSLM RELGLHDDSA SLSKTNPLTH SESLTQFHNL  120
SEFSAESNQF PNPDFSFSDT NFPQQFPTVN QASFINALDL SGDIHQNWSV GFDYVDELIR  180
FAECFETNAF QLAHVILARL NQRLRSAAGK PLQRAAFYFK EALQAQLAGS ARQTRPSSSS  240
DVIQTIKSYK IFSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG GHWASFMKEL  300
ADKAECRKAN APILRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF VLIRTFELLS  360
FKAIKFMEGE KTAVLLSPAI FRRVGSGFVN ELRRISPNVV VHVDSEGLMG YGAMSFRQTV  420
IDGLEFYSTL LESLEAANIG GGNCGDWMRK IENFVLFPKI VDMIGAVGRR GGGGSWKDAM  480
VDAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA TSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2718253427378Protein SCARECROW
5b3h_A2e-2718253426377Protein SCARECROW
5b3h_D2e-2718253426377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067182.10.0scarecrow-like protein 15
SwissprotO232101e-144SCL15_ARATH; Scarecrow-like protein 15
TrEMBLQ9FYW20.0Q9FYW2_SOLLC; BAC19.14
STRINGSolyc02g085600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-145GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]