PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g030030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 609aa MW: 66503.8 Da PI: 4.6695 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 356.4 | 4.1e-109 | 241 | 608 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkf 93 + L+ecA+ + ++ e++ + L rl+e +s++gdpm+R+ +yf+eAL +rl++ + +++ +++ + +e + ++k+f++++P+ kf Sopen02g030030.1 241 LKSLVECARLAE-SEPENVVKSLIRLRESVSQQGDPMERVGFYFLEALYNRLSScQAERTPSIFVT------APEELTLSYKAFNDACPYSKF 326 578******655.57888888999******************************333333333332......35678999************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 +hltaNqaIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s g + +l +tg+rL++fA+ l+++fef++ + Sopen02g030030.1 327 AHLTANQAILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLNFEFEP-IL 418 *******************************************88777*********877788999************************.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 + +++l+ +++r++p+E laVn++lql++llde+ + + L+l ksl+P +v++ e e+++n+ Fl+rf +al+yys++f+sl+ +l Sopen02g030030.1 419 TPVQELNGSSFRIDPDEILAVNFMLQLYNLLDETNVGVK---TALSLAKSLNPSIVTLGEYEVNLNDVGFLQRFKNALKYYSTVFESLDPSLT 508 9******************************88877777...9************************************************** PP GRAS 277 reseerikvErellgreivnvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrp 366 r+s er+ vEr +lgr+i +v g rre +e +e+W+e +e aGFkpv+ls++a++qak ll +++ s + + ++ ++ l Wkd+p Sopen02g030030.1 509 RDSAERVQVERLILGRRIAGAVGLdDGGTRRECMEDKEHWKELMEGAGFKPVTLSHYAMSQAKILLWNYNySSSFGLIDSAPGFLsLAWKDNP 601 **********************7516778*****************************************9999999888777766******* PP GRAS 367 LvsvSaW 373 L++vS+W Sopen02g030030.1 602 LLTVSSW 608 ******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.316 | 214 | 587 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-106 | 241 | 608 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQQQQQQ FLGVNPLCLS PWTSNHQTLT 60 NSPTLGYGLT GSGFADPFQV AGGTDGAEPG FQFPNLEHHS TGFRFADFGG GPGGEFDSDE 120 WMESLIGGGD STGSSNLQSG CEAWQTSSEF TTLYGDPFPS CPNRLSIGSA PPPPPSSDLN 180 GVIFSETQKN LSSLQPQTSP WVAPSSSPPP IVQPASKESK VVSVDVLPCS SPESFSSKPL 240 LKSLVECARL AESEPENVVK SLIRLRESVS QQGDPMERVG FYFLEALYNR LSSCQAERTP 300 SIFVTAPEEL TLSYKAFNDA CPYSKFAHLT ANQAILEATE KATRIHIVDF GIVHGIQWAA 360 FLQALATRSA GKPVSVRISG IPSVVLGNSP AASLLATGNR LRDFAKLLDL NFEFEPILTP 420 VQELNGSSFR IDPDEILAVN FMLQLYNLLD ETNVGVKTAL SLAKSLNPSI VTLGEYEVNL 480 NDVGFLQRFK NALKYYSTVF ESLDPSLTRD SAERVQVERL ILGRRIAGAV GLDDGGTRRE 540 CMEDKEHWKE LMEGAGFKPV TLSHYAMSQA KILLWNYNYS SSFGLIDSAP GFLSLAWKDN 600 PLLTVSSWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-148 | 237 | 609 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066975.1 | 0.0 | SCARECROW-LIKE protein 7 | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A3Q7F8N5 | 0.0 | A0A3Q7F8N5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085340.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8905 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 0.0 | GRAS family protein |