PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g029860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 296aa MW: 33532.2 Da PI: 8.1131 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 8e-33 | 93 | 148 | 4 | 60 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrYkeClkNhAa+lGg+++DGCgEfmps gee t++ lkCaAC+CHRnFHR+e+e+e Sopen02g029860.1 93 VRYKECLKNHAANLGGYVLDGCGEFMPS-GEEETPEYLKCAACDCHRNFHRKETEDE 148 89*************************9.8888********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-30 | 93 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 93 | 146 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.5E-30 | 94 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.907 | 95 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-29 | 227 | 294 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.32E-18 | 228 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-26 | 232 | 289 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEHRGQEKDM GLSNPNPMSY NPSQLNQQES SSSAANKFLT APIAPNRTTN EHENTIFSPN 60 QTLDQHNITQ SSDPDPVRQL STSSASERNI TPVRYKECLK NHAANLGGYV LDGCGEFMPS 120 GEEETPEYLK CAACDCHRNF HRKETEDESQ TPGVHRNNHR IPNQTPPSLP AVPTQQQHHH 180 KYSHSYPRGH MAPVMMSFGG NTGVAAESSS EDLNMFHGGQ GIIQPCNFSA SKKRFRTKFS 240 QQQKDRMLEF AEKLGWRIQK QDEQEVHQFC NEVGVKRQVF KVWMHNSKQA TKKKQT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 233 | 288 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064086.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A3Q7F7J5 | 0.0 | A0A3Q7F7J5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085160.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-68 | homeobox protein 24 |