PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g029350.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SRS

Protein Properties

Length: 341aa MW: 36810.6 Da PI: 6.8865

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g029350.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.3	2.4e-69	113	273	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...........aeaaskrkrelkskkqs 84 g++sCqdCGnqakkdC h+RCRtCCksrgf+C+thv+stWvpaakrrerqqql+++++++++++ +++++kr+re+ ++s Sopen02g029350.1 113 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQQQLSTLQQQQEEEEqqqqqqqtlqlHRDNPKRPRED--PSAS 203 5789************************************************999988877765666666666666666666665..6777 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 +l +t++ +++ + le+ ++P++v s+avf+cvr+ssvdd+++++aYqtav+igGhvfkGiLydqG++++ Sopen02g029350.1 204 SLVCTRILPSTT-SGLEVGNFPAKVTSNAVFHCVRMSSVDDADDQFAYQTAVNIGGHVFKGILYDQGPDNQ 273 888888776654.5899999**********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-67	115	271	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-27	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-26	223	270	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MAGFFSLGGG AAATTSQDQQ QETTNNPESN WFLYRNDHHQ ELPTTYRGFE LWQNTNSQPQ 60 IRNPINPLQD LYPTAAVGLG IGPSHSGYPP MARPNHDPPS AGGSGLVMMR SGGGGISCQD 120 CGNQAKKDCP HMRCRTCCKS RGFQCQTHVR STWVPAAKRR ERQQQLSTLQ QQQEEEEQQQ 180 QQQQTLQLHR DNPKRPREDP SASSLVCTRI LPSTTSGLEV GNFPAKVTSN AVFHCVRMSS 240 VDDADDQFAY QTAVNIGGHV FKGILYDQGP DNQYMAGGES SSGGGSASHQ HNLIGAAGTA 300 TSAATSGGAA PEASPYLDPS LYPAPLNTFM AGTQFFPPPR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331912	0.0	KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064114.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-121	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	K4BAY3	0.0	K4BAY3_SOLLC; Uncharacterized protein
STRING	Solyc02g084680.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	7e-75	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]