PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g029260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 341aa    MW: 36992.3 Da    PI: 6.5131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g029260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18262296135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Sopen02g029260.1 262 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 296
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-7718340IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78256292IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-16256310IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-14258319No hitNo description
Gene3DG3DSA:3.30.50.106.1E-15260294IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-13261309No hitNo description
PROSITE patternPS003440262287IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16262296IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDCAEWALRN SFVPETPLKM TQNQTFGDDF SAAGAGQNGV SGDDFFVDDL LDFSNGFVEG  60
EGEEEEEGKN QGGEGISVQK PCSVSIAVSP LKKTEIDDKD KVTISVNEDF ASLAVSEISV  120
PTDDLDSLEW LSHFVEESFS GYSLAYPAGK LPVEKKTGDG EIRVEEKKPC FATPVQTKAR  180
TKRGRSSVRV WPVCSGSLTE SSSSSTSSSS TTTMSSSPPT GSWFLYPTPV HSAESPGKPL  240
AKKLKKKPTP HGGNGPQQPR RCSHCGVQKT PQWRAGPMGA KTLCNACGVR FKSGRLLPEY  300
RPACSPTFST ELHSNNHRKV LEMRRKKESE ETGLTQPVQS F
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063817.10.0GATA transcription factor 5-like
SwissprotQ9FH571e-72GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7F8830.0A0A3Q7F883_SOLLC; GATA transcription factor
STRINGSolyc02g084590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.26e-67GATA transcription factor 5