PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g028530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 423aa    MW: 46927 Da    PI: 4.4612
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g028530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.51.3e-35116217197
            DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                       klfqrlw +eDei lLqG++++++++g      + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hdq +
  Sopen02g028530.1 116 KLFQRLWMDEDEIELLQGFLEYTTQRGGinsssHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQAT 208
                       579***********************987764334459******************************************************* PP

            DUF573  89 felskkiWg 97 
                       fe+s+kiW 
  Sopen02g028530.1 209 FEISRKIWS 217
                       ********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.5E-33118217IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV  60
ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT IVVEEKKPLV LDDSRKLFQR  120
LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR  180
LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF  240
DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGAINSEEKP GYIQQFYHQS  300
SGGGTNVILP PTPVSMAAPQ ATATAAASIP SLVEETVRSC LSPIFKELFN NLNGSRYSGF  360
GMALGPSPLG GLGNSLMSCD INMKTDEKWR KQQILELEVY SKRLELVQDQ IKAQLEELRS  420
MNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067113.10.0probable transcription factor At3g04930
TrEMBLA0A3Q7F8W30.0A0A3Q7F8W3_SOLLC; Uncharacterized protein
STRINGSolyc02g083750.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.14e-72DNA-binding storekeeper protein-related transcriptional regulator