PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g027410.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WOX

Protein Properties

Length: 274aa MW: 30745.4 Da PI: 5.6102

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g027410.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.3	9.4e-22	94	154	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ Fe+ n +p++++++e++++l +++e++V++WFqNrRa+ k+ Sopen02g027410.1 94 RQRWTPTPMQLQILERIFEQgNGTPTKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 154 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.2e-33	94	156	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Sopen02g027410.1 94 RQRWTPTPMQLQILERIFEQGNGTPTKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 156 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.321	90	155	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.2E-18	90	160	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-15	92	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-19	92	159	IPR009057	Homeodomain-like
CDD	cd00086	1.20E-15	94	156	No hit	No description
Pfam	PF00046	1.8E-19	94	154	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDWEKQQQQP PVSAPQQTAE ELNGTVSGGM FVKVMTDEQM EVLRKQIAVY ATICEQLVDL 60 HKSMASQHDL AGARLGNLYC DPLVTSAGHK ITGRQRWTPT PMQLQILERI FEQGNGTPTK 120 QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQQVAA TNNTESEVET EVESPNEKKT 180 KPEDLQSSHM PTSMAEDLGY ENPDVSSGMH SLDPRTSKPE PMFPSDGSSK PAASYGQMSF 240 YGMSNPRMDQ LMGKMEVPGS YHPYIHADDY NMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	155	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001335376.1	0.0	WUSCHEL-related homeobox 8
Refseq	XP_015064959.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-87	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A3Q7F8C3	0.0	A0A3Q7F8C3_SOLLC; Uncharacterized protein
STRING	Solyc02g082670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-79	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]