PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g027050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 282aa    MW: 31972.3 Da    PI: 10.0994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g027050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-12118162347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+ E+ l++ + +++G g+Wk+I+r+    +t+ q+ s+ qky
  Sopen02g027050.1 118 PWTAGEHSLFLMGLNKFGRGDWKSISRHYVVSKTPTQVASHAQKY 162
                       7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.182076IPR017884SANT domain
SMARTSM007171.72174IPR001005SANT/Myb domain
SuperFamilySSF466891.44E-62374IPR009057Homeodomain-like
CDDcd001670.007582472No hitNo description
PROSITE profilePS5129414.77111167IPR017930Myb domain
SuperFamilySSF466891.29E-14113166IPR009057Homeodomain-like
SMARTSM007171.9E-6115165IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.5E-16116165IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.6E-8118162IPR009057Homeodomain-like
CDDcd001674.11E-8118163No hitNo description
PfamPF002492.6E-9118162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDWPEFLESS NPQEPTIDLS QINKWTPEEK QVFENAFSRF NNLGSQTFFE FVASKFPHKS  60
MEEMKNLYIN LFKEAEMENP SINTNVVDNS SDKEANLNDK PPPPVQISHS RPHRRGIPWT  120
AGEHSLFLMG LNKFGRGDWK SISRHYVVSK TPTQVASHAQ KYFCRRTSKT PVDRRRPSIN  180
DIQTVTVNST RTTTTTASNN NDQVGSSSRS FRYANYTFGG PTFANNSNGN FGIYHPGEAS  240
GSNSFILKQN NNNNNNLHRP VSPRPFLSMY LSSTRGNNPQ AK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064860.20.0transcription factor SRM1-like
TrEMBLK4BAA90.0K4BAA9_SOLLC; Uncharacterized protein
STRINGSolyc02g082390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-30MYB family protein