PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g026690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 323aa    MW: 37047.7 Da    PI: 7.0962
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g026690.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+lv+ ++ +G  +W+++++  g+ R++k+c++rw +yl
  Sopen02g026690.1 13 RGLWSPEEDEKLVKHINTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                      788*******************************************97 PP

2Myb_DNA-binding51.42.4e-1666109146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Sopen02g026690.1  66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                       899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.95860IPR017930Myb domain
SuperFamilySSF466892.21E-2810107IPR009057Homeodomain-like
SMARTSM007172.7E-131262IPR001005SANT/Myb domain
PfamPF002492.1E-151360IPR001005SANT/Myb domain
CDDcd001675.36E-111660No hitNo description
PROSITE profilePS5129426.12561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2464116IPR009057Homeodomain-like
SMARTSM007171.7E-1565113IPR001005SANT/Myb domain
PfamPF002498.1E-1566109IPR001005SANT/Myb domain
CDDcd001673.55E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVKHINT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF  120
DPNTHNLLST KKKNNNNYTK SSIFTIETSL SSSSTKELVS MDMIKASLAA LSTFPNYANN  180
MSMPQYQTSL SRLYGSVCVP TTTNIIGNSN FASTIDYNKQ STIINEKCMW SVTGFETPQH  240
EFGNGHEEMK QEAQVQFEDK NCQEEVLYKV NDLHEFNHDG RRIAENVTFD EGSDFDFEFM  300
DSELVPRGIF TNIDSIDQLA WDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065447.10.0transcription factor MYB86-like
SwissprotQ8LPH62e-70MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3Q7F5S70.0A0A3Q7F5S7_SOLLC; Uncharacterized protein
STRINGSolyc02g082040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-79myb domain protein 67