PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g025580.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 550aa MW: 59671.6 Da PI: 7.3974 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 9e-31 | 295 | 353 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Sopen02g025580.2 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGTHNHP 353 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 279 | 355 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-28 | 287 | 355 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.562 | 289 | 355 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-37 | 294 | 354 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-27 | 296 | 353 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MDKGWGLTLE TSSSNSDRAG FFKNKPVFGF NLSPKFNAAE MFSSSDEKRS IVNEVDFFSD 60 KKPFVKKENS QADNSIRNDD QCVVNTGLQL VIANAGSDQS TVDDGVSSEV LEDKRAKIQQ 120 LAQLQVELER MNSENQRLKG MLTQVSNSYS ALQMHLVTLM QQQLNSRTEN THPHEVAGAN 180 SDEEKKKENN GTIVPRQFME LGPSGSKVDP MDEPSHSRSS SEERTLSGSP RNNMELVSRD 240 KAINREESPE SESWAPNKAP KLMTSSTKPV EQSTEATMRK ARVSVRARSE APMISDGCQW 300 RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDRS ILITTYEGTH NHPLPPAAMA 360 MASTTSAAAN MLLSGSMPSA DGLMNTNFLA RAMLPCSSNM ATISASAPFP TVTLDLTAQN 420 PNAALPNYHQ RINQANPQFQ FPLPAGLNHP NFAASMSAPQ IPHVLGQPLY NQSKFSGLQI 480 SQDNIHHHPS ISHDTLSAAT AAITADPNFT AALAAAISSI IGGSHPNNGN SPMSGPSSNN 540 NNNTSSFPGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 281 | 357 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB711128 | 0.0 | AB711128.1 Solanum tuberosum StWRKY16 mRNA for transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015063871.1 | 0.0 | probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-156 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A3Q7F586 | 0.0 | A0A3Q7F586_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g080890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-130 | WRKY family protein |