PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g023830.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 981aa    MW: 107522 Da    PI: 6.4294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g023830.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.62.7e-19321420198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Sopen02g023830.3 321 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGLPLKMQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRIE-PE 411
                       89**************************444556667***************9989999999***9.********************887.56 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv++ ++
  Sopen02g023830.3 412 GKLVMGCRK 420
                       656665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-30317421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.23E-19318416IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-23319420No hitNo description
PfamPF023622.2E-16321420IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096321422IPR003340B3 DNA binding domain
SMARTSM010196.6E-23321421IPR003340B3 DNA binding domain
PROSITE profilePS5105014.023575625IPR011124Zinc finger, CW-type
PfamPF074961.7E-10580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILPERIKDV NNWNPIAGSG  120
PVPWRQAPSL FNGSTNQNEL QHKAPFPEAT VSIDRLSLGE RPFALLSDNN RKDSCEKLMN  180
GKLKIGVPGT PEDGYAGSNR DEAHKSCLSA PWQSSYANSE LSAPSFCLTV GSASKNEPTV  240
HSKVSVSVPQ QTTLSIPLPL GKQLGGHATV DSAGETQVRS SKIRGDGRGK NQLLPRYWPR  300
ITDQELRRLS EDSNSVITPL FEKMLSASDA GRIGRLVLPK KCAEAYFPPI SNPEGLPLKM  360
QDLKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRIEP EGKLVMGCRK  420
ASNILTADQG SEACSNGNGV ATNGNASTKH TKSSEEVLAN STKKGFSSTT LVAATSARAE  480
IKMSDDLVNE SLGNNRPIRC KRKGSTMGSK RKRMRIDNDN LVELKVTVVQ AQGLMRPPSS  540
GAPTVIVIEG CEFEEYEQED APIIGRPTIP HMDQLGEKIQ WVQCEDCFKW RKVPDNVDLP  600
SRWTCSDNSC DPERSVCSAA QELTADHLRD LLPHINKASK KRKASKQEMD LVETLDGLDA  660
LAHLAILEEG ETLPASPQAT TKHPRHRPGC TCIVCIQPPS GKGPKHKQSC DCNVCKSVKR  720
RFKTLMLKRE KKLSEKEAEA TCQKLQPQSA GQLLDGDDIQ EPIDDAVHLS PQHGELNNEG  780
SVDPNYLNEK KSSVEDPNYF DEKKSSVDDT NYLSEKISSV DDPSYLNEKE SSVDDPNCLN  840
EKKLSVDDPN CLNEKKSAVD DPNYVDERKS SVDDPNCLNE KKSSASPFKG EFDLNAKPDR  900
DDELSPGSDS GSMMRMIKRA AEQYVRHCDN GSSVGNQRDG DGAGETNPGN CVIVSGSHQA  960
DVDHNRPLPI STAASLAPND Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-622994231125B3 domain-containing transcription repressor VAL1
5yzz_C1e-622994231125B3 domain-containing transcription repressor VAL1
5z00_C1e-622994231125B3 domain-containing transcription repressor VAL1
5z00_G1e-622994231125B3 domain-containing transcription repressor VAL1
5z00_K1e-622994231125B3 domain-containing transcription repressor VAL1
5z00_M1e-622994231125B3 domain-containing transcription repressor VAL1
6j9a_A1e-622994232126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066876.10.0B3 domain-containing protein Os07g0563300 isoform X3
SwissprotQ0D5G41e-176Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A1U8FW700.0A0A1U8FW70_CAPAN; B3 domain-containing protein Os07g0563300 isoform X3
STRINGSolyc02g079020.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-154high-level expression of sugar-inducible gene 2