PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g023830.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 996aa MW: 109151 Da PI: 6.4294 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.7e-19 | 337 | 436 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e Sopen02g023830.2 337 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGLPLKMQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRIE-PE 427 89**************************444556667***************9989999999***9.********************887.56 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv++ ++ Sopen02g023830.2 428 GKLVMGCRK 436 656665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-30 | 333 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-19 | 334 | 432 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.15E-23 | 335 | 436 | No hit | No description |
SMART | SM01019 | 6.6E-23 | 337 | 437 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.096 | 337 | 438 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-16 | 337 | 436 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.023 | 590 | 640 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.7E-10 | 595 | 637 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 996 aa Download sequence Send to blast |
MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILTPNPAWP PPSLFLPLQP 120 ERIKDVNNWN PIAGSGPVPW RQAPSLFNGS TNQNELQHKA PFPEATVSID RLSLGERPFA 180 LLSDNNRKDS CEKLMNGKLK IGVPGTPEDG YAGSNRDEAH KSCLSAPWQS SYANSELSAP 240 SFCLTVGSAS KNEPTVHSKV SVSVPQQTTL SIPLPLGKQL GGHATVDSAG ETQVRSSKIR 300 GDGRGKNQLL PRYWPRITDQ ELRRLSEDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKMQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT 420 FSRIEPEGKL VMGCRKASNI LTADQGSEAC SNGNGVATNG NASTKHTKSS EEVLANSTKK 480 GFSSTTLVAA TSARAEIKMS DDLVNESLGN NRPIRCKRKG STMGSKRKRM RIDNDNLVEL 540 KVTVVQAQGL MRPPSSGAPT VIVIEGCEFE EYEEDAPIIG RPTIPHMDQL GEKIQWVQCE 600 DCFKWRKVPD NVDLPSRWTC SDNSCDPERS VCSAAQELTA DHLRDLLPHI NKASKKRKAS 660 KQEMDLVETL DGLDALAHLA ILEEGETLPA SPQATTKHPR HRPGCTCIVC IQPPSGKGPK 720 HKQSCDCNVC KSVKRRFKTL MLKREKKLSE KEAEATCQKL QPQSAGQLLD GDDIQEPIDD 780 AVHLSPQHGE LNNEGSVDPN YLNEKKSSVE DPNYFDEKKS SVDDTNYLSE KISSVDDPSY 840 LNEKESSVDD PNCLNEKKLS VDDPNCLNEK KSAVDDPNYV DERKSSVDDP NCLNEKKSSA 900 SPFKGEFDLN AKPDRDDELS PGSDSGSMMR MIKRAAEQYV RHCDNGSSVG NQRDGDGAGE 960 TNPGNCVIVS GSHQADVDHN RPLPISTAAS LAPNDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-62 | 315 | 439 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066875.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X2 | ||||
Swissprot | Q0D5G4 | 1e-176 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1U8FW70 | 0.0 | A0A1U8FW70_CAPAN; B3 domain-containing protein Os07g0563300 isoform X3 | ||||
STRING | Solyc02g079020.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-155 | high-level expression of sugar-inducible gene 2 |