PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g023830.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 997aa MW: 109280 Da PI: 6.4294

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g023830.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	337	436	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e Sopen02g023830.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISNPEGLPLKMQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRIE-PE 427 89************************444556667***********99899999999.*******************887.56 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv++ ++ Sopen02g023830.1 428 GKLVMGCRK 436 656665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.3E-30	333	437	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-19	334	432	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.17E-23	335	436	No hit	No description
SMART	SM01019	6.6E-23	337	437	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.096	337	438	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-16	337	436	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.023	591	641	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.7E-10	596	638	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS 60 GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILTPNPAWP PPSLFLPLQP 120 ERIKDVNNWN PIAGSGPVPW RQAPSLFNGS TNQNELQHKA PFPEATVSID RLSLGERPFA 180 LLSDNNRKDS CEKLMNGKLK IGVPGTPEDG YAGSNRDEAH KSCLSAPWQS SYANSELSAP 240 SFCLTVGSAS KNEPTVHSKV SVSVPQQTTL SIPLPLGKQL GGHATVDSAG ETQVRSSKIR 300 GDGRGKNQLL PRYWPRITDQ ELRRLSEDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKMQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT 420 FSRIEPEGKL VMGCRKASNI LTADQGSEAC SNGNGVATNG NASTKHTKSS EEVLANSTKK 480 GFSSTTLVAA TSARAEIKMS DDLVNESLGN NRPIRCKRKG STMGSKRKRM RIDNDNLVEL 540 KVTVVQAQGL MRPPSSGAPT VIVIEGCEFE EYEQEDAPII GRPTIPHMDQ LGEKIQWVQC 600 EDCFKWRKVP DNVDLPSRWT CSDNSCDPER SVCSAAQELT ADHLRDLLPH INKASKKRKA 660 SKQEMDLVET LDGLDALAHL AILEEGETLP ASPQATTKHP RHRPGCTCIV CIQPPSGKGP 720 KHKQSCDCNV CKSVKRRFKT LMLKREKKLS EKEAEATCQK LQPQSAGQLL DGDDIQEPID 780 DAVHLSPQHG ELNNEGSVDP NYLNEKKSSV EDPNYFDEKK SSVDDTNYLS EKISSVDDPS 840 YLNEKESSVD DPNCLNEKKL SVDDPNCLNE KKSAVDDPNY VDERKSSVDD PNCLNEKKSS 900 ASPFKGEFDL NAKPDRDDEL SPGSDSGSMM RMIKRAAEQY VRHCDNGSSV GNQRDGDGAG 960 ETNPGNCVIV SGSHQADVDH NRPLPISTAA SLAPNDQ

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MSSSAAASGN VCFNSNCKEF VEKTRKGWRR RTGEFAELCD RCGSAYDDGK FCDAFHLNSS  60
GWRSCESCGK QIHCGCIVSF HTFVLLDAGG IECIACARKS FILTPNPAWP PPSLFLPLQP  120
ERIKDVNNWN PIAGSGPVPW RQAPSLFNGS TNQNELQHKA PFPEATVSID RLSLGERPFA  180
LLSDNNRKDS CEKLMNGKLK IGVPGTPEDG YAGSNRDEAH KSCLSAPWQS SYANSELSAP  240
SFCLTVGSAS KNEPTVHSKV SVSVPQQTTL SIPLPLGKQL GGHATVDSAG ETQVRSSKIR  300
GDGRGKNQLL PRYWPRITDQ ELRRLSEDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKMQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT  420
FSRIEPEGKL VMGCRKASNI LTADQGSEAC SNGNGVATNG NASTKHTKSS EEVLANSTKK  480
GFSSTTLVAA TSARAEIKMS DDLVNESLGN NRPIRCKRKG STMGSKRKRM RIDNDNLVEL  540
KVTVVQAQGL MRPPSSGAPT VIVIEGCEFE EYEQEDAPII GRPTIPHMDQ LGEKIQWVQC  600
EDCFKWRKVP DNVDLPSRWT CSDNSCDPER SVCSAAQELT ADHLRDLLPH INKASKKRKA  660
SKQEMDLVET LDGLDALAHL AILEEGETLP ASPQATTKHP RHRPGCTCIV CIQPPSGKGP  720
KHKQSCDCNV CKSVKRRFKT LMLKREKKLS EKEAEATCQK LQPQSAGQLL DGDDIQEPID  780
DAVHLSPQHG ELNNEGSVDP NYLNEKKSSV EDPNYFDEKK SSVDDTNYLS EKISSVDDPS  840
YLNEKESSVD DPNCLNEKKL SVDDPNCLNE KKSAVDDPNY VDERKSSVDD PNCLNEKKSS  900
ASPFKGEFDL NAKPDRDDEL SPGSDSGSMM RMIKRAAEQY VRHCDNGSSV GNQRDGDGAG  960
ETNPGNCVIV SGSHQADVDH NRPLPISTAA SLAPNDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	2e-62	315	439	2	126	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066874.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q0D5G4	1e-175	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1U8FW70	0.0	A0A1U8FW70_CAPAN; B3 domain-containing protein Os07g0563300 isoform X3
STRING	Solyc02g079020.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-155	high-level expression of sugar-inducible gene 2