PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g022770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 98aa MW: 11171.6 Da PI: 8.2317 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 76.7 | 3.8e-24 | 52 | 98 | 2 | 48 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 Cqv++C+ad+++ak yhrrhkvCe+hsk+p vl+sgl++rfCqqCsr Sopen02g022770.1 52 CQVDQCTADMADAKPYHRRHKVCEFHSKSPIVLISGLQKRFCQQCSR 98 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-24 | 45 | 98 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.102 | 49 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-22 | 50 | 98 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-18 | 52 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
METNKWEGKR SITEAEKEED EHGSVEEDSK RKRVLTLSGR KLVGEGSAHP SCQVDQCTAD 60 MADAKPYHRR HKVCEFHSKS PIVLISGLQK RFCQQCSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-20 | 52 | 98 | 11 | 57 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM155895 | 1e-165 | HM155895.1 Solanum lycopersicum isolate 71_P3CNRDseq genomic sequence. | |||
GenBank | HM155896 | 1e-165 | HM155896.1 Solanum lycopersicum isolate 72_P3CNRDseq genomic sequence. | |||
GenBank | HM155897 | 1e-165 | HM155897.1 Solanum lycopersicum isolate 74_P3CNRDseq genomic sequence. | |||
GenBank | HM155898 | 1e-165 | HM155898.1 Solanum lycopersicum isolate 75_P3CNRDseq genomic sequence. | |||
GenBank | HM155899 | 1e-165 | HM155899.1 Solanum lycopersicum isolate 76_P3CNRDseq genomic sequence. | |||
GenBank | HM155900 | 1e-165 | HM155900.1 Solanum lycopersicum isolate 79_P3CNRDseq genomic sequence. | |||
GenBank | HM155901 | 1e-165 | HM155901.1 Solanum lycopersicum isolate 81_P3CNRDseq genomic sequence. | |||
GenBank | HM155902 | 1e-165 | HM155902.1 Solanum lycopersicum isolate 83_P3CNRDseq genomic sequence. | |||
GenBank | HM155903 | 1e-165 | HM155903.1 Solanum lycopersicum isolate 82_P3CNRDseq genomic sequence. | |||
GenBank | HM155904 | 1e-165 | HM155904.1 Solanum lycopersicum isolate 84_P3CNRDseq genomic sequence. | |||
GenBank | HM155905 | 1e-165 | HM155905.1 Solanum lycopersicum isolate 85_P3CNRDseq genomic sequence. | |||
GenBank | HM155906 | 1e-165 | HM155906.1 Solanum lycopersicum isolate 87_P3CNRDseq genomic sequence. | |||
GenBank | HM155907 | 1e-165 | HM155907.1 Solanum lycopersicum isolate 88_P3CNRDseq genomic sequence. | |||
GenBank | HM155908 | 1e-165 | HM155908.1 Solanum lycopersicum isolate 89_P3CNRDseq genomic sequence. | |||
GenBank | HM155909 | 1e-165 | HM155909.1 Solanum lycopersicum isolate 90_P3CNRDseq genomic sequence. | |||
GenBank | HM155910 | 1e-165 | HM155910.1 Solanum lycopersicum isolate 91_P3CNRDseq genomic sequence. | |||
GenBank | HM155911 | 1e-165 | HM155911.1 Solanum lycopersicum isolate 92_P3CNRDseq genomic sequence. | |||
GenBank | HM155912 | 1e-165 | HM155912.1 Solanum lycopersicum isolate 93_P3CNRDseq genomic sequence. | |||
GenBank | HM155913 | 1e-165 | HM155913.1 Solanum lycopersicum isolate 94_P3CNRDseq genomic sequence. | |||
GenBank | HM155914 | 1e-165 | HM155914.1 Solanum lycopersicum isolate 95_P3CNRDseq genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232901.1 | 5e-68 | SQUAMOSA promoter binding protein-like isoform X4 | ||||
Swissprot | Q38741 | 4e-33 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A3Q7F4A8 | 1e-66 | A0A3Q7F4A8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077920.2.1 | 6e-67 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-24 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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