PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 265aa    MW: 30877.4 Da    PI: 4.7727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19120170255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  Sopen02g022260.1 120 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFSTAEEAAMAYDKAALRIRG 170
                       7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-32119179IPR001471AP2/ERF domain
PROSITE profilePS5103223.933120178IPR001471AP2/ERF domain
SMARTSM003805.2E-37120184IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23120180IPR016177DNA-binding domain
CDDcd000181.59E-31120179No hitNo description
PfamPF008473.8E-14120170IPR001471AP2/ERF domain
PRINTSPR003674.8E-11121132IPR001471AP2/ERF domain
PRINTSPR003674.8E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MTSHHVENNN QEQDQVACEE ILENVWANFI SKNDQNSQKV TNEYCCEQYW EQLPILERLP  60
SLGRWISMGA ETWEDILNGI IIPSHNNENS NDESTCKDVV NVEKKEEEKK KKMVINNTRH  120
YRGVRRRPWG KYAAEIRDSS RKGARVWLGT FSTAEEAAMA YDKAALRIRG PKAYLNFPHE  180
IVAQAIGIPN GPYEKEWTFS SSSQYNSRKR VSRDWNMYEN LDEINQLPME KKIVRSMEED  240
LFNDLDILEF EDLGSDYLDS LLSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-28119178160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065478.10.0ethylene-responsive transcription factor 1B-like
TrEMBLA0A3Q7F5C01e-178A0A3Q7F5C0_SOLLC; Uncharacterized protein
STRINGSolyc02g077360.1.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-28ERF family protein