PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g022170.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 284aa MW: 32203.1 Da PI: 4.4644

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g022170.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	32.4	3.2e-10	96	156	36	89
TCP 36 qdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 q +LG d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ + Sopen02g022170.1 96 QTQLGDDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsqenR 156 789************************9994444433345555555555444443332221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-7	96	152	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MNHQFQVSDE EDGSEEEEEE EEEGFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFIVSE 60 QELNKGTRRM KPQRAKTDVI EGHGGRIIRA TGKERQTQLG DDRPSKAIDW LIKEAKAAID 120 ALGEFPNNFH STKLNPKKMQ YSFDQEQSPE FSQENRGVPN SECGVQDNQQ EIPFLSDLQS 180 YPHGHFLNFQ SLQDDTILSS GNQHQGSFFT TTSVNHFPPV LSQNQVFSHR EPLQSSFFPL 240 MSDPLSTQLE TLSYGFSNDG FSGIISSASR IQGEEEQATF FTAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069120.1	1e-178	transcription factor TCP10-like
TrEMBL	K4B8V2	1e-175	K4B8V2_SOLLC; Uncharacterized protein
STRING	Solyc02g077250.2.1	1e-175	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	3e-09	TCP family protein