PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g021170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 33850.6 Da PI: 6.3673 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 76 | 134 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ Sopen02g021170.1 76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 134 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-31 | 72 | 136 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 74 | 136 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 75 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.409 | 76 | 136 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 77 | 134 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMITS TSSPKRRRSI EKRVVSVPIK 60 EIEGSKMKGE ISMPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRADP 120 NMLVVTYSCE HNHPWPASRN NQHNHRTTTN TSCIINNNTK TKMKTIASLT ATTTTTTITT 180 SNIAVSEEKV TGDFTRPSEP NSDEKFVNLG ESSSSLINAN EFGWFSDLIE CTSTTMLESP 240 ILTQVDCDID MSSTLTMREE DVSLFADLGE LPECSTVFGR GMMERDEERR RHSLTSWCGT 300 TG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-22 | 65 | 136 | 3 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-22 | 65 | 136 | 3 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU056917 | 0.0 | EU056917.1 Solanum tuberosum WRKY transcription factor 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064336.1 | 0.0 | probable WRKY transcription factor 65 isoform X2 | ||||
Swissprot | Q9LP56 | 7e-73 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A7UGD2 | 0.0 | A7UGD2_SOLTU; WRKY transcription factor 5 | ||||
STRING | Solyc02g072190.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 3e-58 | WRKY DNA-binding protein 69 |
Publications ? help Back to Top | |||
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