PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g021170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 302aa    MW: 33850.6 Da    PI: 6.3673
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g021170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3076134259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  Sopen02g021170.1  76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 134
                       69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3172136IPR003657WRKY domain
SuperFamilySSF1182902.35E-2674136IPR003657WRKY domain
SMARTSM007744.2E-3675135IPR003657WRKY domain
PROSITE profilePS5081132.40976136IPR003657WRKY domain
PfamPF031063.8E-2677134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDGRFNNFFV SEQEDSENSP ENSSDSPRSG LFNDNKMITS TSSPKRRRSI EKRVVSVPIK  60
EIEGSKMKGE ISMPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRADP  120
NMLVVTYSCE HNHPWPASRN NQHNHRTTTN TSCIINNNTK TKMKTIASLT ATTTTTTITT  180
SNIAVSEEKV TGDFTRPSEP NSDEKFVNLG ESSSSLINAN EFGWFSDLIE CTSTTMLESP  240
ILTQVDCDID MSSTLTMREE DVSLFADLGE LPECSTVFGR GMMERDEERR RHSLTSWCGT  300
TG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2265136379Disease resistance protein RRS1
5w3x_D3e-2265136379Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0569170.0EU056917.1 Solanum tuberosum WRKY transcription factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064336.10.0probable WRKY transcription factor 65 isoform X2
SwissprotQ9LP567e-73WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA7UGD20.0A7UGD2_SOLTU; WRKY transcription factor 5
STRINGSolyc02g072190.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.23e-58WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]